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Source database (GenBank or RefSeq) File type

ASM200815v1

Anomalous assembly.

Organism name:

Rhizobium sophorae (a-proteobacteria)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: CCBAU 03386

BioSample:

SAMN06094795

BioProject:

PRJNA355900

Submitter:

Northeast institute of Geography and Agroecology, Chinese Academy of Sciences

Date:

2017/02/28

Assembly type:

Assembly level:

Contig

Genome representation:

full

Assembly anomaly:

unverified source organism

Excluded from RefSeq:

unverified source organism
not used as type

GenBank assembly accession:

GCA_002008155.1 (latest)

RefSeq assembly accession:

GCF_002008155.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

MRDK01

Assembly method:

SOAPdenovo v. 1.5

Expected final version:

yes

Genome coverage:

60.0x

Sequencing technology:

Illumina HiSeq

IDs: 1013671 [UID] 4162478 [GenBank] 4163648 [RefSeq]

See Genome Information for Rhizobium sophorae

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002008155.1	=	GCF_002008155.1	ASM200815v1	Contig	Latest GenBank, RefSeq suppressed

Comment

Bacteria and source DNA available from Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found ... here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::12/07/2016 15:21:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,731
CDS (total)::6,676
Genes (coding)::6,323
CDS (coding)::6,323
Genes (RNA)::55
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::353
Pseudo Genes (ambiguous residues)::0 of 353
Pseudo Genes (frameshifted)::217 of 353
Pseudo Genes (incomplete)::180 of 353
Pseudo Genes (internal stop)::49 of 353
Pseudo Genes (multiple problems)::81 of 353
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	6,913,256
Total ungapped length	6,913,256
Number of contigs	71
Contig N50	297,999
Contig L50	9
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	71

	ANI	Query coverage	Subject coverage
Declared type	88.32	62.61	57.71
Best-match type	99.99	95.78	99.34

Assembly

Genome Assembly

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Download Assembly

ASM200815v1

See Genome Information for Rhizobium sophorae

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result