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ASM183817v1

Organism name:
Corynebacterium sp. HMSC034A01 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: HMSC034A01
BioSample:
SAMN04498677
BioProject:
PRJNA299945
Submitter:
The Genome Institute at Washington University
Date:
2016/10/25
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001838175.1 (latest)
RefSeq assembly accession:
GCF_001838175.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LTNW01
Assembly method:
Velvet v. 1.1.06
Genome coverage:
167x
Sequencing technology:
Illumina

IDs: 851971 [UID] 3594998 [GenBank] 3649238 [RefSeq]

See Genome Information for Corynebacterium sp. HMSC034A01

History (Show revision history)

Comment

The WUSC is a large strain collection isolated from clinical samples. Each sample is associated with metadata, including source, isolation site, 16s rRNA, metabolic, and other phenotypic information. The goal is to sample an adequate number of important, yet ... minor species, further adding to the catelogue of sequenced bacterial genomes and improving the diversity of the genomes available to the public. WGS will be preformed on approximely 550 isolates. Samples were selected based on RDP analysis at the genus level. This is a reference genomes for the Human Microbiome Project and the work was funded by the National Institutes of Health (NIH) grant U54 HG004968.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/03/2016 03:09:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,295
CDS (total)::2,242
Genes (coding)::2,143
CDS (coding)::2,143
Genes (RNA)::53
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::99
Pseudo Genes (ambiguous residues)::0 of 99
Pseudo Genes (frameshifted)::5 of 99
Pseudo Genes (incomplete)::90 of 99
Pseudo Genes (internal stop)::4 of 99
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,393,833
Total ungapped length2,390,833
Gaps between scaffolds0
Number of scaffolds66
Scaffold N50135,404
Scaffold L508
Number of contigs96
Contig N5082,302
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)96

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,393,833662,390,833135,404300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium sp. HMSC034A01Corynebacterium sp. HMSC034A01

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_027570055.1Corynebacterium lehmanniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.7588.4984.39

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna