U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM177807v1

Organism name:
Candidatus Falkowbacteria bacterium RIFOXYA2_FULL_35_8 (bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04314344
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001778075.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MFFZ01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 821951 [UID] 3534158 [GenBank]

See Genome Information for Candidatus Falkowbacteria bacterium RIFOXYA2_FULL_35_8

Pathogen Detection Resources

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/07/2016 10:19:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,021
CDS (total)::976
Genes (coding)::885
CDS (coding)::885
Genes (RNA)::45
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::42
ncRNAs::0
Pseudo Genes (total)::91
Pseudo Genes (ambiguous residues)::39 of 91
Pseudo Genes (frameshifted)::2 of 91
Pseudo Genes (incomplete)::55 of 91
Pseudo Genes (internal stop)::0 of 91
Pseudo Genes (multiple problems)::5 of 91
##Genome-Annotation-Data-END##

Global statistics

Total sequence length986,500
Total ungapped length982,533
Gaps between scaffolds0
Number of scaffolds60
Scaffold N5022,512
Scaffold L5015
Number of contigs135
Contig N5012,032
Contig L5027
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)60

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced986,50060982,53322,512750

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Falkowbacteria bacterium RIFOXYA2_FULL_35_8Candidatus Falkowbacteria bacterium RIFOXYA2_FULL_35_8

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000292935.1Fusobacterium hwasookiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type76.080.110.04

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena