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ASM158693v1

Organism name:
Sterolibacterium denitrificans (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 13999
BioSample:
SAMN03817231
BioProject:
PRJNA288611
Submitter:
Academia Sinica
Date:
2016/03/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001586935.1 (latest)
RefSeq assembly accession:
GCF_001586935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LFZK01
Assembly method:
AllPaths v. SEP-2012
Expected final version:
no
Genome coverage:
5000.0x
Sequencing technology:
Illumina HiSeq

IDs: 659911 [UID] 2944968 [GenBank] 3397758 [RefSeq]

See Genome Information for Sterolibacterium denitrificans

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/08/2015 14:49:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::841
CDS::780
Pseudo Genes::50
rRNAs::0
tRNAs::11
ncRNA::0
Frameshifted Genes::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length952,224
Total ungapped length943,994
Gaps between scaffolds0
Number of scaffolds3
Scaffold N50731,876
Scaffold L501
Number of contigs11
Contig N50538,378
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced952,2243943,994731,87680

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sterolibacterium denitrificansSterolibacterium denitrificans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004801295.1Pseudothauera nasutitermitistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.516.211.24

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected