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ASM94897v1

Organism name:
Thalassomonas actiniarum (g-proteobacteria)
Infraspecific name:
Strain: A5K-106
BioSample:
SAMN03278135
BioProject:
PRJNA271847
Submitter:
University of the Western Cape
Date:
2015/03/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000948975.1 (replaced)
RefSeq assembly accession:
GCF_000948975.1 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JYNI01
Assembly method:
CLC NGS Cell v. 6.5
Expected final version:
no
Genome coverage:
36.0x
Sequencing technology:
Illumina MiSeq

IDs: 308321 [UID] 1670528 [GenBank] 1676588 [RefSeq]

See Genome Information for Thalassomonas actiniarum

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This WGS project has been superceded by the complete genome in (non-WGS) GenBank records CP059735, CP059736

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/24/2015 19:35:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.9 (rev. 456657)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::6,281
CDS::5,461
Pseudo Genes::722
rRNAs::10 ( 5S, 16S, 23S )
tRNAs::87
ncRNA::1
Frameshifted Genes::29
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,420,857
Total ungapped length7,420,814
Gaps between scaffolds0
Number of scaffolds132
Scaffold N50127,647
Scaffold L5016
Number of contigs133
Contig N50127,647
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)132

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,420,8571327,420,814127,64710