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ASM82877v1

Organism name:: Serratia marcescens SM39 (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: SM39
BioSample:: SAMD00061009
BioProject:: PRJDB1121
Submitter:: Frontier Science Research Center, University of Miyazaki
Date:: 2014/01/09
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000828775.1 (latest)
RefSeq assembly accession:: GCF_000828775.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: phred/phrap/consed package
Genome coverage:: 12.6x
Sequencing technology:: Sanger

IDs: 248061 [UID] 1504558 [GenBank] 1507068 [RefSeq]

See Genome Information for Serratia marcescens

Pathogen Detection Resources

There are 2568 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000828775.1	=	GCF_000828775.1	ASM82877v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 01:28:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,100
CDSs (total)::4,980
Genes (coding)::4,938
CDSs (with protein)::4,938
Genes (RNA)::120
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::88
ncRNAs::10
Pseudo Genes (total)::43
CDSs (without protein)::42
Pseudo Genes (ambiguous residues)::0 of 43
Pseudo Genes (frameshifted)::17 of 43
Pseudo Genes (incomplete)::25 of 43
Pseudo Genes (internal stop)::9 of 43
Pseudo Genes (multiple problems)::8 of 43
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,326,023
Total ungapped length	5,326,023
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	AP013063.1	=	NZ_AP013063.1
Plasmid pSMC1	AP013064.1	=	NZ_AP013064.1
Plasmid pSMC2	AP013065.1	=	NZ_AP013065.1

Molecule	Total Length
All	5,326,023
Chromosome	5,225,577
Plasmid pSMC1	41,517
Plasmid pSMC2	58,929

	ANI	Query coverage	Subject coverage
Declared type	95.59	83.82	86.49
Best-match type	95.59	83.82	86.49

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ASM82877v1

See Genome Information for Serratia marcescens

Pathogen Detection Resources

There are 2568 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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Average Nucleotide Identity (ANI) data

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