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ASM81704v1

Organism name:
Bifidobacterium animalis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: A6
BioSample:
SAMN03273367
BioProject:
PRJNA271239
Submitter:
China Agricultural University
Date:
2015/01/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000817045.1 (latest)
RefSeq assembly accession:
GCF_000817045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2
Genome coverage:
200x
Sequencing technology:
PacBio RS

IDs: 242161 [UID] 1467028 [GenBank] 1488908 [RefSeq]

See Genome Information for Bifidobacterium animalis

There are 224 assemblies for this organism

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History (Show revision history)

Comment

Source DNA available from Fazheng Ren, Key Laboratory of Functional Dairy, College of Food Science and Nutritional Engineering, China Agricultural University (renfazheng@263.net)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found ... here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/27/2023 01:15:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,633
CDSs (total)::1,562
Genes (coding)::1,547
CDSs (with protein)::1,547
Genes (RNA)::71
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::52
ncRNAs::3
Pseudo Genes (total)::15
CDSs (without protein)::15
Pseudo Genes (ambiguous residues)::0 of 15
Pseudo Genes (frameshifted)::11 of 15
Pseudo Genes (incomplete)::4 of 15
Pseudo Genes (internal stop)::1 of 15
Pseudo Genes (multiple problems)::1 of 15
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,958,651
Total ungapped length1,958,651
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000817055.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP010433.1=NZ_CP010433.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,958,651

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium animalisBifidobacterium animalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000022965.1Bifidobacterium animalis subsp. lactis DSM 10140type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000022965.1Bifidobacterium animalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.97100.00
Best-match type99.9998.97100.00

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna