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ASM78487v3

  • Anomalous assembly.
Organism name:
Pantoea sp. PSNIH1 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PSNIH1
BioSample:
SAMN02709496
BioProject:
PRJNA242843
Submitter:
NIH
Date:
2014/12/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_000784875.3 (latest)
RefSeq assembly accession:
GCF_000784875.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Portal v. 2.0
Sequencing technology:
PacBio RSII

IDs: 240741 [UID] 1463268 [GenBank] 1489848 [RefSeq]

See Genome Information for Pantoea sp. PSNIH1

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Global statistics

Total sequence length4,410,683
Total ungapped length4,410,683
Total number of chromosomes and plasmids7

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000784895.3)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP009880.2=NZ_CP009880.1
Plasmid pKPC-1c5CP009881.1=NZ_CP009881.1
Plasmid pPSP-ee2CP009884.1=NZ_CP009884.1
Plasmid pPSP-3a9CP010326.1=NZ_CP010326.1
Plasmid pPSP-a3eCP009883.1=NZ_CP009883.1
Plasmid pPSP-26eCP009882.1=NZ_CP009882.1
Plasmid pPSP-057CP010325.1=NZ_CP010325.1

Assembly statistics

MoleculeTotal
Length
All4,410,683
Chromosome 3,488,376
Plasmid pKPC-1c550,272
Plasmid pPSP-ee216,636
Plasmid pPSP-3a9329,383
Plasmid pPSP-a3e331,227
Plasmid pPSP-26e87,166
Plasmid pPSP-057107,623

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pantoea sp. PSNIH1Pantoea sp. PSNIH1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002095385.1Pantoea eucrinatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.7480.0990.76

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna