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ASM77212v1

Organism name:
Bacillus subtilis (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ATCC 13952
BioSample:
SAMN03010508
BioProject:
PRJNA259687
Submitter:
Jiangxi Normal University
Date:
2014/11/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
GenBank assembly accession:
GCA_000772125.1 (latest)
RefSeq assembly accession:
GCF_000772125.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
velvet v. 1.2.10
Reference guided assembly:
CP002634.1
Genome coverage:
172x
Sequencing technology:
Illumina

IDs: 219801 [UID] 1369558 [GenBank] 1494658 [RefSeq]

See Genome Information for Bacillus subtilis

There are 1026 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/24/2014 15:46:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.8 (rev. 449627)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::4,005
CDS::3,852
Pseudo Genes::59
rRNAs::21 ( 5S, 16S, 23S )
tRNAs::72
ncRNA::1
Frameshifted Genes::32
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,876,276
Total ungapped length3,876,276
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000772135.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP009748.1=NZ_CP009748.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,876,276

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus subtilisBacillus subtilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001697265.1Bacillus subtilis subsp. subtilistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000196735.1Bacillus amyloliquefacienssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type81.3135.5732.74
Best-match type99.4594.0791.61

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is suspected of being inaccurate