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ASM75948v1

Organism name:
Campylobacter fetus subsp. fetus 04/554 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 04/554
BioSample:
SAMN02870597
BioProject:
PRJNA177180
Submitter:
Utrecht University
Date:
2014/09/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000759485.1 (latest)
RefSeq assembly accession:
GCF_000759485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6
Genome coverage:
334x
Sequencing technology:
Sanger dideoxy sequencing; 454; Illumina; PacBio

IDs: 213431 [UID] 1315428 [GenBank] 1495598 [RefSeq]

See Genome Information for Campylobacter fetus

There are 478 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 05:27:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,904
CDSs (total)::1,848
Genes (coding)::1,821
CDSs (with protein)::1,821
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::27
CDSs (without protein)::27
Pseudo Genes (ambiguous residues)::0 of 27
Pseudo Genes (frameshifted)::13 of 27
Pseudo Genes (incomplete)::12 of 27
Pseudo Genes (internal stop)::5 of 27
Pseudo Genes (multiple problems)::2 of 27
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,826,626
Total ungapped length1,826,626
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000759505.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP008808.1=NZ_CP008808.1
Plasmid pCFF04554CP008809.1=NZ_CP008809.1

Assembly statistics

MoleculeTotal
Length
All1,826,626
Chromosome 1,800,764
Plasmid pCFF0455425,862

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter fetus subsp. fetus 04/554Campylobacter fetus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900475935.1Campylobacter fetus subsp. fetustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900475935.1Campylobacter fetustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5494.7698.16
Best-match type99.5494.7698.16

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna