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ASM55076v1

  • Anomalous assembly.
Organism name:
Komagataeibacter xylinus E25 (a-proteobacteria)
Taxonomy check:
Failed
Infraspecific name:
Strain: E25
BioSample:
SAMN03081456
BioProject:
PRJNA190024
Submitter:
Genomed SA
Date:
2014/02/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_000550765.1 (latest)
RefSeq assembly accession:
GCF_000550765.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Mira v. 2010
Sequencing technology:
454; Sanger dideoxy sequencing

IDs: 107901 [UID] 924298 [GenBank] 1517188 [RefSeq]

See Genome Information for Komagataeibacter xylinus

There are 12 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,905,082
Total ungapped length3,905,082
Total number of chromosomes and plasmids6

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000550775.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004360.1=NZ_CP004360.1
Plasmid pGX1CP004361.1=NZ_CP004361.1
Plasmid pGX2CP004362.1=NZ_CP004362.1
Plasmid pGX3CP004363.1=NZ_CP004363.1
Plasmid pGX4CP004364.1=NZ_CP004364.1
Plasmid pGX5CP004365.1=NZ_CP004365.1

Assembly statistics

MoleculeTotal
Length
All3,905,082
Chromosome 3,447,725
Plasmid pGX15,531
Plasmid pGX22,216
Plasmid pGX326,296
Plasmid pGX487,176
Plasmid pGX5336,138

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Komagataeibacter xylinus E25Komagataeibacter xylinus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003207915.1Komagataeibacter xylinussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003207895.1Komagataeibacter swingsiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type85.9654.4358.06
Best-match type96.4081.5985.36

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna