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ASM52681v1

Organism name:
Pediococcus acidilactici AGR20 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AGR20
BioSample:
SAMN02584994
BioProject:
PRJNA214531
Submitter:
DOE Joint Genome Institute
Date:
2014/01/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000526815.1 (latest)
RefSeq assembly accession:
GCF_000526815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAGU01
Assembly method:
Unknown program v. before 2013-08-07
Genome coverage:
Unknown
Sequencing technology:
PacBio RS; Illumina HiSeq 2000

IDs: 96221 [UID] 900558 [GenBank] 1081968 [RefSeq]

See Genome Information for Pediococcus acidilactici

There are 300 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1020263
Source DNA and Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Source DNA available from William Kelly (bill.kelly@agresearch.co.nz)
Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Contacts: William Kelly (bill.kelly@agresearch.co.nz)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Pediococcus acidilactici AGR20
sequencing_meth::WGS
GOLD Stamp ID::Gi0042725
Isolation Site::sheep rumen
Gram Staining::Gram+
##MIGS-Data-END##

Global statistics

Total sequence length1,924,318
Total ungapped length1,924,318
Number of contigs2
Contig N501,850,049
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,924,31821,924,3181,850,04900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pediococcus acidilactici AGR20Pediococcus acidilactici

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016726765.1Pediococcus acidilacticineotype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016726765.1Pediococcus acidilacticineotype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5483.6582.41
Best-match type97.5483.6582.41

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna