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Source database (GenBank or RefSeq) File type

ASM43010v1

Organism name:: Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: 41578
BioSample:: SAMN01088008
BioProject:: PRJNA78477
Submitter:: FDA
Date:: 2013/07/16
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000430105.1 (latest)
RefSeq assembly accession:: GCF_000430105.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SMRT Analysis v. 1.3.4
Genome coverage:: 80x
Sequencing technology:: PacBio

IDs: 41121 [UID] 737338 [GenBank] 754708 [RefSeq]

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 526039 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000430105.1	=	GCF_000430105.1	ASM43010v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::01/03/2024 13:21:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,857
CDSs (total)::4,735
Genes (coding)::4,602
CDSs (with protein)::4,602
Genes (RNA)::122
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::85
ncRNAs::15
Pseudo Genes (total)::133
CDSs (without protein)::133
Pseudo Genes (ambiguous residues)::0 of 133
Pseudo Genes (frameshifted)::57 of 133
Pseudo Genes (incomplete)::86 of 133
Pseudo Genes (internal stop)::26 of 133
Pseudo Genes (multiple problems)::30 of 133
Pseudo Genes (short protein)::1 of 133
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,951,478
Total ungapped length	4,951,478
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP004086.1	=	NC_021810.1
Plasmid pSEEH1578_01	CP004087.1	=	NC_021811.1
Plasmid pSEEH1578_02	CP004088.1	=	NC_021841.1
Plasmid pSEEH1578_03	CP004857.1	=	NC_021869.1

Molecule	Total Length
All	4,951,478
Chromosome	4,793,479
Plasmid pSEEH1578_01	117,929
Plasmid pSEEH1578_02	35,297
Plasmid pSEEH1578_03	4,773

	ANI	Query coverage	Subject coverage
Declared type	99.10	92.47	92.10
Best-match type	99.10	92.47	92.10

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ASM43010v1

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 526039 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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