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ASM42622v1

Organism name:
Desulforegula conservatrix Mb1Pa (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Mb1Pa
BioSample:
SAMN02440640
BioProject:
PRJNA195702
Submitter:
DOE Joint Genome Institute
Date:
2013/07/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000426225.1 (latest)
RefSeq assembly accession:
GCF_000426225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AUEY01
Assembly method:
Unknown program v. before 2013-03-19
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 60601 [UID] 777018 [GenBank] 1117448 [RefSeq]

See Genome Information for Desulforegula conservatrix

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1007527
Source DNA and Organism available from Christopher W. Schadt (schadtcw@ornl.gov)
Source DNA available from Christopher W. Schadt (schadtcw@ornl.gov)
Organism available from Christopher W. Schadt (schadtcw@ornl.gov)
Contacts: Christopher W. Schadt (schadtcw@ornl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft ... assembly at JGI-PGF
Annotation by JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Desulforegula conservatrix Mb1Pa, DSM 13527
sequencing_meth::WGS
ref_biomaterial::DSM 13527
GOLD Stamp ID::Gi38793
Funding Program::DOE-CSP 2011
Gram Staining::Gram-
##MIGS-Data-END##

Global statistics

Total sequence length4,469,042
Total ungapped length4,464,516
Gaps between scaffolds0
Number of scaffolds178
Scaffold N5050,838
Scaffold L5024
Number of contigs184
Contig N5050,838
Contig L5024
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)184

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,469,0421784,464,51650,83860

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulforegula conservatrix Mb1PaDesulforegula conservatrix

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017377355.1Desulfonema limicolasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.340.110.07

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected