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ASM42204v1

Organism name:
Streptococcus pyogenes HSC5 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: HSC5
BioSample:
SAMN02604317
BioProject:
PRJNA205050
Submitter:
Washington University in St Louis
Date:
2013/07/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000422045.1 (latest)
RefSeq assembly accession:
GCF_000422045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SeqMan NGen v. 4.0.0
Genome coverage:
220X
Sequencing technology:
454; Illumina

IDs: 40791 [UID] 731508 [GenBank] 751658 [RefSeq]

See Genome Information for Streptococcus pyogenes

There are 23527 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source DNA is available from: Michael Caparon, Ph.D., Department of Molecular Microbiology, Washington University School of Medicine, Phone (314) 362-1485

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/14/2023 01:27:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,833
CDSs (total)::1,744
Genes (coding)::1,691
CDSs (with protein)::1,691
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::4
Pseudo Genes (total)::53
CDSs (without protein)::53
Pseudo Genes (ambiguous residues)::0 of 53
Pseudo Genes (frameshifted)::29 of 53
Pseudo Genes (incomplete)::22 of 53
Pseudo Genes (internal stop)::25 of 53
Pseudo Genes (multiple problems)::17 of 53
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,818,351
Total ungapped length1,818,351
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000422055.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006366.1=NC_021807.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,818,351

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus pyogenes HSC5Streptococcus pyogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002055535.1Streptococcus pyogenestype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002055535.1Streptococcus pyogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9494.3089.55
Best-match type98.9494.3089.55

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna