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IDs: 502708 [UID] 502588 [GenBank] 502708 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4091459 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the ... distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::08/12/2023 01:15:59Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.5Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::3,695CDSs (total)::3,647Genes (coding)::3,589CDSs (with protein)::3,589Genes (RNA)::48rRNAs::1, 1, 1 (5S, 16S, 23S)complete rRNAs::1, 1, 1 (5S, 16S, 23S)tRNAs::41ncRNAs::4Pseudo Genes (total)::58CDSs (without protein)::58Pseudo Genes (ambiguous residues)::0 of 58Pseudo Genes (frameshifted)::20 of 58Pseudo Genes (incomplete)::34 of 58Pseudo Genes (internal stop)::10 of 58Pseudo Genes (multiple problems)::6 of 58CRISPR Arrays::3##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Synechococcus sp. PCC 6312collection_date::1963lat_lon::Missingdepth::Missingalt_elev::Missingcountry::USAenvironment::Missingnum_replicons::2ref_biomaterial::PCC 6312, ATCC 27167biotic_relationship::Free livingtrophic_level::Missingrel_to_oxygen::Aerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPSfinishing_strategy::FinishedGOLD Stamp ID::Gi05879Type Strain::NoFunding Program::DOE-GEBA 2009Gene Calling Method::Prodigal 1.4, GenePRIMPIsolation Site::Fresh water, California, USA., 1963Motility::NonmotileTemperature Range::MesophileGram Staining::Gram-Diseases::None##MIGS-Data-END##
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