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Source database (GenBank or RefSeq) File type

ASM27289v3

Organism name:: Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: CVM 22462
BioSample:: SAMN01813482
BioProject:: PRJNA49971
Submitter:: FDA
Date:: 2015/01/07
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000272895.3 (latest)
RefSeq assembly accession:: GCF_000272895.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SMRT Portal HGAP v. 2.1.1
Genome coverage:: 100X
Sequencing technology:: PacBio

IDs: 300171 [UID] 1642108 [GenBank] 1660358 [RefSeq]

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 525610 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000272895.3	=	GCF_000272895.2	ASM27289v3	Complete Genome	Latest GenBank, Latest RefSeq
GCA_000272895.2	n/a	n/a	ASM27289v2	Contig	Replaced GenBank
GCA_000272895.1	=	GCF_000272895.1	ASM27289v1	Contig	Replaced GenBank, Replaced RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacterial culture available from Dwayne Roberson, FDA College Park Campus, 5100 Paint Branch Parkway, College Park, MD 20740.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::12/08/2023 04:49:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,078
CDSs (total)::4,955
Genes (coding)::4,817
CDSs (with protein)::4,817
Genes (RNA)::123
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::88
ncRNAs::13
Pseudo Genes (total)::138
CDSs (without protein)::138
Pseudo Genes (ambiguous residues)::0 of 138
Pseudo Genes (frameshifted)::54 of 138
Pseudo Genes (incomplete)::101 of 138
Pseudo Genes (internal stop)::21 of 138
Pseudo Genes (multiple problems)::34 of 138
Pseudo Genes (short protein)::1 of 138
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,121,199
Total ungapped length	5,121,199
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP010280.1	=	NZ_CP010280.1
Plasmid pCFSAN000934_02	CP009567.1	=	NZ_CP009567.1
Plasmid pCFSAN000934_03	CP009568.1	=	NZ_CP009568.1
Plasmid pCVM22462	CP009566.1	=	NZ_CP009566.1

Molecule	Total Length
All	5,121,199
Chromosome	4,864,348
Plasmid pCFSAN000934_02	158,521
Plasmid pCFSAN000934_03	3,605
Plasmid pCVM22462	94,725

	ANI	Query coverage	Subject coverage
Declared type	99.00	89.21	92.27
Best-match type	99.00	89.21	92.27

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ASM27289v3

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 525610 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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