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ASM21129v1

Organism name:
Mesomycoplasma hyorhinis MCLD (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MCLD
BioSample:
SAMN02603925
BioProject:
PRJNA61173
Submitter:
The Hebrew University Hadassah Medical School
Date:
2011/04/27
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000211295.1 (latest)
RefSeq assembly accession:
GCF_000211295.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 375868 [UID] 273918 [GenBank] 375868 [RefSeq]

See Genome Information for Mesomycoplasma hyorhinis

There are 100 assemblies for this organism

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History (Show revision history)

Comment

Genome was manually curated based on annotation generated by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html
Source bacteria availabe from The Mycoplasm Laboratory, The Hebrew University-Hadassah Medical School (rottem@huji.ac.il).
The annotation ... was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000211295.1-RS_2024_03_25
Annotation Date::03/25/2024 17:55:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::765
CDSs (total)::729
Genes (coding)::696
CDSs (with protein)::696
Genes (RNA)::36
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::30
ncRNAs::3
Pseudo Genes (total)::33
CDSs (without protein)::33
Pseudo Genes (ambiguous residues)::0 of 33
Pseudo Genes (frameshifted)::27 of 33
Pseudo Genes (incomplete)::5 of 33
Pseudo Genes (internal stop)::9 of 33
Pseudo Genes (multiple problems)::8 of 33
##Genome-Annotation-Data-END##

Global statistics

Total sequence length829,709
Total ungapped length829,709
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000211305.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002669.1=NC_017519.1

Assembly statistics

MoleculeTotal
Length
Chromosome 829,709

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mesomycoplasma hyorhinis MCLDMesomycoplasma hyorhinis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000383515.1Mesomycoplasma hyorhinis ATCC 17981type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000383515.1Mesomycoplasma hyorhinistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5595.5298.55
Best-match type99.5595.5298.55

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna