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Source database (GenBank or RefSeq) File type

ASM21095v1

Organism name:: Streptococcus pneumoniae OXC141 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: OXC141
BioSample:: SAMEA3138387
BioProject:: PRJNA50733
Submitter:: The Wellcome Trust Sanger Institute
Date:: 2010/07/29
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000210955.1 (latest)
RefSeq assembly accession:: GCF_000210955.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 380188 [UID] 273518 [GenBank] 380188 [RefSeq]

See Genome Information for Streptococcus pneumoniae

Pathogen Detection Resources

There are 45852 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000210955.1	=	GCF_000210955.1	ASM21095v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/12/2023 11:08:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,128
CDSs (total)::2,055
Genes (coding)::1,907
CDSs (with protein)::1,907
Genes (RNA)::73
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::148
CDSs (without protein)::148
Pseudo Genes (ambiguous residues)::0 of 148
Pseudo Genes (frameshifted)::76 of 148
Pseudo Genes (incomplete)::73 of 148
Pseudo Genes (internal stop)::53 of 148
Pseudo Genes (multiple problems)::45 of 148
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,036,867
Total ungapped length	2,036,867
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	98.78	94.67	91.35
Best-match type	98.78	94.67	91.35

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ASM21095v1

See Genome Information for Streptococcus pneumoniae

Pathogen Detection Resources

There are 45852 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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