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Source database (GenBank or RefSeq) File type

Lach_bact_F0167_V1

Organism name:

Lachnospiraceae oral taxon 107 str. F0167 (firmicutes)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: F0167

BioSample:

SAMN02595376

BioProject:

PRJNA42531

Submitter:

Broad Institute

Date:

2011/04/29

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

genus undefined

GenBank assembly accession:

GCA_000209465.1 (latest)

RefSeq assembly accession:

GCF_000209465.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

ADDS01

Assembly method:

Newbler v. 2.3-PostRelease-11/19/2009

Genome coverage:

34x

Sequencing technology:

454

IDs: 277958 [UID] 277368 [GenBank] 277958 [RefSeq]

See Genome Information for Lachnospiraceae bacterium oral taxon 500

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000209465.1	=	GCF_000209465.1	Lach_bact_F0167_V1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA and bacteria provided by Jacques Izard, Oxana V. Baranova, Jessica M. Blanton, Anne C. Tanner and Floyd E. ... Dewhirst (Molecular Genetics, The Forsyth Institute, Boston, MA 02115, USA).
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length	3,288,100
Total ungapped length	3,279,855
Gaps between scaffolds	0
Number of scaffolds	70
Scaffold N50	157,802
Scaffold L50	6
Number of contigs	104
Contig N50	90,471
Contig L50	12
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	104

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	86.59	57.16	60.52

Assembly

Genome Assembly

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Download Assembly

Lach_bact_F0167_V1

See Genome Information for Lachnospiraceae bacterium oral taxon 500

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result