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ASM17469v1

Organism name:
Corynebacterium aurimucosum ATCC 700975
Infraspecific name:
Strain: ATCC 700975
BioSample:
SAMN00138950
Submitter:
Baylor College of Medecine
Date:
2009/04/27
Assembly level:
Contig
Genome representation:
full
GenBank Assembly ID:
GCA_000174695.1 (latest)
RefSeq Assembly ID:
GCF_000174695.1 (latest)
RefSeq Assembly and GenBank Assembly Identical:
yes
WGS Project:
ACLH01

IDs: 217478 [UID] 217458 [GenBank] 217478 [RefSeq]

See Genome Information for Corynebacterium aurimucosum

There are 2 assemblies for this organism

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History (Show revision history)

Comment

This sequence is generated as a part of the Human Microbiome Project (HMP), funded by the National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI) Large-Scale Sequencing Research Network and the National Institute of Allergy and Infectious ... Diseases (NIAID) Microbial Genome Sequencing Centers Program. The mission of the HMP is to generate resources to enable the characterization of the human microbiota, the microbial communities living within human bodies, and analyze the role of these organisms in human health and disease. See http://www.hmpdacc.org/ for more information.
The sequenced strain was obtained from Dr. James Versalovic (contact information: Department of Pathology, Texas Children's Hospital, 6621 Fannin Street MC-12261, Houston TX 77030; email jamesv@bcm.edu). The genomic DNA was prepared from a single bacterial isolate. The sequence generated included at least 10 fold coverage of Roche/454 Lifesciences FLX fragment data and at least 8 fold clone coverage of Roche/454 Lifesciences paired-end data.
The Roche/454 Lifesciences sequence was assembled using the Roche/454 Lifescience Newbler assembler. The contigs from the Newbler assembly were aligned with mapping tools such as Mosaic and Crossmatch and these data were used for error correction for this version of the draft assembly. This draft assembly meets the HMP draft quality standards (more than 90% of the genome is included in contigs, more than 90% of a core set of bacterial genes are found with > 30% identity and > 30% length; more than 90% of the bases in the assembly have more than 5 fold sequence coverage, the contig N50 length is greater than 5kb, the scaffold N50 length is greater than 20kb, and there is less than 1 gap per 5kb).
This is a reference genome for the Human Microbiome Project.
This project is co-owned with the Human Microbiome Project DACC.
Sequencing Technology: 454; ABI
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Global statistics

Total sequence length2,730,325
Total assembly gap length0
Number of contigs101
Contig N5054,185
Total number of chromosomes and plasmids0

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This assembly only contains unplaced WGS contigs. The WGS contigs can be viewed in the WGS Browser.

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