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ASM17089v1

Organism name:
Plesiocystis pacifica SIR-1 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SIR-1
BioSample:
SAMN02436152
BioProject:
PRJNA19341
Submitter:
The Gordon and Betty Moore Foundation Microbial Genome Sequencing project
Date:
2007/06/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000170895.1 (latest)
RefSeq assembly accession:
GCF_000170895.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ABCS01

IDs: 210198 [UID] 210178 [GenBank] 210198 [RefSeq]

See Genome Information for Plesiocystis pacifica

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length10,587,646
Total ungapped length10,587,646
Number of contigs237
Contig N5082,268
Contig L5040
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)237

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,587,64623710,587,64682,26800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Plesiocystis pacifica SIR-1Plesiocystis pacifica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_026337845.1Paraliomyxa miuraensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.711.631.45

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected