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ASM16607v1

  • Record removed. This version of the assembly has been suppressed.
Organism name:
Geobacillus sp. Y4.1MC1 (firmicutes)
Infraspecific name:
Strain: Y4.1MC1
BioSample:
SAMN00002562
BioProject:
PRJNA33183
Submitter:
US DOE Joint Genome Institute (JGI-PGF)
Date:
2010/11/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000166075.1 (suppressed)
RefSeq assembly accession:
GCF_000166075.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.3
Genome coverage:
30x
Sequencing technology:
454/Illumina

IDs: 255618 [UID] 201558 [GenBank] 255618 [RefSeq]

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 4086101
Source DNA and organism available from David Mead (dmead@lucigen.com)
Contacts: David Mead (dmead@lucigen.com)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the distribution and use ... of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Geobacillus sp. Y4.1MC1
collection_date::Missing
lat_lon::44.376262 -110.690383
depth::Missing
alt_elev::Missing
country::USA
environment::Missing
num_replicons::2
ref_biomaterial::Missing
biotic_relationship::Free living
trophic_level::Chemoorganotroph
rel_to_oxygen::Facultative
isol_growth_condt::Missing
sequencing_meth::WGS
assembly::Newbler v. 2.3 (pre-release)
finishing_strategy::Finished
GOLD Stamp ID::Gi03944
Funding Program::DOEM 2004
Isolation Site::Bath Hot Spring in Yellowstone National Park
Cell Shape::Rod-shaped
Motility::Motile
Sporulation::Sporulating
Temperature Range::Thermophile
Gram Staining::Gram+
Diseases::None
##MIGS-Data-END##

Global statistics

Total sequence length3,911,947
Total ungapped length3,911,947
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000166085.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002293.1=NC_014650.1
Plasmid pGY4MC101CP002294.1=NC_014651.1

Assembly statistics

MoleculeTotal
Length
All3,911,947
Chromosome 3,840,330
Plasmid pGY4MC10171,617