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Bact_sp_D2_V2

Organism name:
Bacteroides sp. D2 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: D2
BioSample:
SAMN02463697
BioProject:
PRJNA32449
Submitter:
Broad Institute
Date:
2012/04/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000159075.2 (latest)
RefSeq assembly accession:
GCF_000159075.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACGA02
Assembly method:
Newbler v. 2.0.0-PreRelease-04/10/2008
Genome coverage:
32x
Sequencing technology:
454

IDs: 395458 [UID] 395438 [GenBank] 395458 [RefSeq]

See Genome Information for Bacteroides sp. D2

There are 2 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Strauss, J.C., Sibley, C., White, A., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, ... Guelph, Ontario, N1G 2W1, Canada).
Bacteria provided by Strauss, J.C., Sibley, C., White, A., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length6,920,457
Total ungapped length6,914,757
Gaps between scaffolds0
Number of scaffolds12
Scaffold N50885,347
Scaffold L504
Number of contigs69
Contig N50213,049
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)69

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,920,457126,914,757885,347570

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides sp. D2Bacteroides sp. D2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020149745.1Bacteroides ovatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.9665.8470.76

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna