Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

ASM14671v1

Organism name:
Streptococcus pyogenes ATCC 10782
Infraspecific name:
Strain: ATCC 10782
BioSample:
SAMN00189880
Submitter:
Baylor College of Medicine
Date:
2010/09/03
Assembly level:
Scaffold
Genome representation:
full
GenBank Assembly ID:
GCA_000146715.1 (latest)
RefSeq Assembly ID:
GCF_000146715.1 (latest)
RefSeq Assembly and GenBank Assembly Identical:
yes
WGS Project:
AEEO01
Assembly method:
Newbler Assembler v. 2.3-10192009
Genome coverage:
33x
Sequencing technology:
454

IDs: 233978 [UID] 169688 [GenBank] 233978 [RefSeq]

See Genome Information for Streptococcus pyogenes

There are 229 assemblies for this organism

See more

History (Show revision history)

Comment

Streptococcus pyogenes ATCC 10782

Strain source, body site: Airways, nasal

Inquiries should be directed to microbe@hgsc.bcm.tmc.edu

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. This sequence is
... generated as a part of the Human Microbiome Project (HMP), funded by the National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI) Large-Scale Sequencing Research Network and the National Institute of Allergy and Infectious Diseases (NIAID) Microbial Genome Sequencing Centers Program. The mission of the HMP is to generate resources to enable the characterization of the human microbiota, the microbial communities living within human bodies, and analyze the role of these organisms in human health and disease. See http://www.hmpdacc.org/ for more information.

The sequenced strain was obtained from ATCC. The genomic DNA was prepared from a single bacterial isolate. The sequence generated included at least 10 fold coverage of Roche/454 Lifesciences FLX fragment data and at least 8 fold clone coverage of Roche/454 Lifesciences paired-end data. The Roche/454 Lifesciences sequence was assembled using the Roche/454 Lifesciences Newbler assembler. This draft assembly meets the HMP draft quality standards (more than 90% of the genome is included in contigs, more than 90% of a core set of bacterial genes are found with > 30% identity and > 30% length; more than 90% of the bases in the assembly have more than 5 fold sequence coverage, the contig N50 length is greater than 5kb, the scaffold N50 length is greater than 20kb, and there is less than 1 gap per 5kb).
more

Global statistics

Total sequence length1,917,082
Total assembly gap length77,235
Gaps between scaffolds0
Number of scaffolds29
Scaffold N501,838,678
Number of contigs90
Contig N5048,257
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Assembly Unit: Primary Assembly (GCF_000146725.1)
Molecule nameGenBank IDRefSeq IDUnlocalized
sequences count
Chromosome n/an/an/a29

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome AllAssembled moleculeUnlocalized scaffolds1,917,08201,917,082290291,839,84701,839,8471,838,67801,838,67861061000
Write to the Help Desk