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Source database (GenBank or RefSeq) File type

ASM1064v1

Organism name:: Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 (CFB group bacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: CfPt1-2
BioSample:: SAMD00060940
BioProject:: PRJDA29025
Submitter:: RIKEN Genomic Sciences Center (GSC)
Date:: 2008/11/12
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000010645.1 (latest)
RefSeq assembly accession:: GCF_000010645.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 32128 [UID] 11448 [GenBank] 32128 [RefSeq]

See Genome Information for Candidatus Azobacteroides pseudotrichonymphae

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000010645.1	=	GCF_000010645.1	ASM1064v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::12/18/2023 01:09:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,049
CDSs (total)::1,005
Genes (coding)::996
CDSs (with protein)::996
Genes (RNA)::44
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 2, 1 (5S, 16S, 23S)
tRNAs::38
ncRNAs::2
Pseudo Genes (total)::9
CDSs (without protein)::9
Pseudo Genes (ambiguous residues)::0 of 9
Pseudo Genes (frameshifted)::3 of 9
Pseudo Genes (incomplete)::5 of 9
Pseudo Genes (internal stop)::3 of 9
Pseudo Genes (multiple problems)::2 of 9
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,224,919
Total ungapped length	1,224,919
Total number of chromosomes and plasmids	5

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	AP010656.1	=	NC_011565.1
Plasmid pCFPG1	AP010657.1	=	NC_011564.1
Plasmid pCFPG2	AP010658.1	=	NC_011561.1
Plasmid pCFPG3	AP010659.1	=	NC_011562.1
Plasmid pCFPG4	AP010660.1	=	NC_011563.1

Molecule	Total Length
All	1,224,919
Chromosome	1,114,206
Plasmid pCFPG1	37,560
Plasmid pCFPG2	37,111
Plasmid pCFPG3	31,893
Plasmid pCFPG4	4,149

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	84.43	0.37	0.15

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ASM1064v1

See Genome Information for Candidatus Azobacteroides pseudotrichonymphae

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Average Nucleotide Identity (ANI) data

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