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ASM1000v1

Organism name:
Limosilactobacillus reuteri subsp. reuteri JCM 1112 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 1112
BioSample:
SAMD00060920
BioProject:
PRJDA19011
Submitter:
Kitasato Institute for Life Sciences
Date:
2008/04/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000010005.1 (latest)
RefSeq assembly accession:
GCF_000010005.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 31508 [UID] 10808 [GenBank] 31508 [RefSeq]

See Genome Information for Limosilactobacillus reuteri

There are 997 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/21/2024 08:57:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,090
CDSs (total)::2,004
Genes (coding)::1,941
CDSs (with protein)::1,941
Genes (RNA)::86
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::65
ncRNAs::3
Pseudo Genes (total)::63
CDSs (without protein)::63
Pseudo Genes (ambiguous residues)::0 of 63
Pseudo Genes (frameshifted)::22 of 63
Pseudo Genes (incomplete)::28 of 63
Pseudo Genes (internal stop)::22 of 63
Pseudo Genes (multiple problems)::9 of 63
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,039,414
Total ungapped length2,039,414
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000010015.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP007281.1=NC_010609.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,039,414

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Limosilactobacillus reuteri subsp. reuteri JCM 1112Limosilactobacillus reuteri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000016825.1Limosilactobacillus reuteri subsp. reuteritype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000016825.1Limosilactobacillus reuteritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.0099.95
Best-match type99.9998.0099.95

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna