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Callithrix jacchus-3.2

Organism name:
Callithrix jacchus
Submitter:
Washington University (WashU)
Date:
2010/01/22
Assembly level:
Chromosome
Genome representation:
full
GenBank Assembly ID:
GCA_000004665.1 (latest)
RefSeq Assembly ID:
GCF_000004665.1 (latest)
RefSeq Assembly and GenBank Assembly Identical:
yes
WGS Project:
ACFV01

IDs: 6608 [UID] 5898 [GenBank] 6608 [RefSeq]

See Genome Information for Callithrix jacchus

History (Show revision history)

Global statistics

Total sequence length2,914,958,544
Total assembly gap length162,452,744
Gaps between scaffolds2,242
Number of scaffolds16,399
Scaffold N505,167,444
Number of contigs201,371
Contig N5029,273
Total number of chromosomes and plasmids24

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Global assembly definition

Download the full sequence report
Assembly Unit: Primary Assembly (GCF_000004685.1)
Molecule nameGenBank IDRefSeq IDUnlocalized
sequences count
Chromosome 1CM000856.1=NC_013896.1272
Chromosome 2CM000857.1=NC_013897.1160
Chromosome 3CM000858.1=NC_013898.1109
Chromosome 4CM000859.1=NC_013899.1153
Chromosome 5CM000860.1=NC_013900.1148
Chromosome 6CM000861.1=NC_013901.1155
Chromosome 7CM000862.1=NC_013902.1107
Chromosome 8CM000863.1=NC_013903.182
Chromosome 9CM000864.1=NC_013904.1138
Chromosome 10CM000865.1=NC_013905.1106
Chromosome 11CM000866.1=NC_013906.1114
Chromosome 12CM000867.1=NC_013907.187
Chromosome 13CM000868.1=NC_013908.176
Chromosome 14CM000869.1=NC_013909.198
Chromosome 15CM000870.1=NC_013910.161
Chromosome 16CM000871.1=NC_013911.164
Chromosome 17CM000872.1=NC_013912.149
Chromosome 18CM000873.1=NC_013913.151
Chromosome 19CM000874.1=NC_013914.128
Chromosome 20CM000875.1=NC_013915.168
Chromosome 21CM000876.1=NC_013916.142
Chromosome 22CM000877.1=NC_013917.1129
Chromosome XCM000878.1=NC_013918.1279
Chromosome YCM000879.1=NC_013919.149
unplacedn/an/an/a11,556

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1AllAssembled moleculeUnlocalized scaffolds215,927,180210,400,6355,526,545501229272204,289,788199,159,6085,130,1804,078,1464,078,14641,67313,45213,0154372302300
Chromosome 2AllAssembled moleculeUnlocalized scaffolds207,607,435204,313,9513,293,484294134160197,006,822193,958,9293,047,8936,268,8086,268,80841,39512,01111,7392721351350
Chromosome 3AllAssembled moleculeUnlocalized scaffolds192,728,775190,850,7961,877,97919586109183,907,627182,151,6781,755,9497,736,7107,736,71031,7389,9409,81013087870
Chromosome 4AllAssembled moleculeUnlocalized scaffolds174,673,594171,630,2743,043,320254101153166,354,324163,489,1812,865,1437,547,6417,566,73246,1709,6539,4302231021020
Chromosome 5AllAssembled moleculeUnlocalized scaffolds161,704,552159,171,4112,533,141296148148152,065,395149,672,1882,393,2074,422,2014,422,20127,47011,97611,7791971491490
Chromosome 6AllAssembled moleculeUnlocalized scaffolds160,852,914158,406,7342,446,180255100155152,643,443150,392,5492,250,8948,265,9708,265,97026,0278,9758,7891861011010
Chromosome 7AllAssembled moleculeUnlocalized scaffolds157,268,708155,834,2431,434,46518982107148,662,074147,318,1371,343,9377,194,4647,194,46420,57910,49110,37012183830
Chromosome 8AllAssembled moleculeUnlocalized scaffolds129,240,703128,169,2931,071,4101496782122,375,159121,367,3521,007,8076,591,4686,591,46819,8757,0706,9809068680
Chromosome 9AllAssembled moleculeUnlocalized scaffolds126,052,641124,281,9921,770,649265127138118,794,215117,157,6261,636,5896,027,9056,640,99719,4038,2708,1241461281280
Chromosome 10AllAssembled moleculeUnlocalized scaffolds133,990,898132,174,5271,816,37120498106126,576,572124,851,7271,724,8455,855,1306,230,96045,9308,3708,22914199990
Chromosome 11AllAssembled moleculeUnlocalized scaffolds132,298,687130,397,2571,901,43020288114124,392,285122,636,1041,756,1816,651,8226,651,82228,4138,5008,33017089890
Chromosome 12AllAssembled moleculeUnlocalized scaffolds123,473,099121,768,1011,704,99822413787116,236,772114,670,7361,566,0363,099,9243,099,92434,7928,4478,3061411381380
Chromosome 13AllAssembled moleculeUnlocalized scaffolds118,961,469117,903,8541,057,6151507476112,945,031111,969,328975,7035,396,1205,396,12019,1676,4646,3947075750
Chromosome 14AllAssembled moleculeUnlocalized scaffolds110,008,065108,792,8651,215,2001788098104,841,431103,709,6891,131,7424,218,7214,218,72119,6966,4566,3639381810
Chromosome 15AllAssembled moleculeUnlocalized scaffolds99,215,59998,464,013751,586103426195,175,07294,476,333698,7396,978,4126,978,41222,6075,5935,5375643430
Chromosome 16AllAssembled moleculeUnlocalized scaffolds97,861,70096,796,9701,064,730104406493,635,02692,655,659979,3676,908,9536,908,95329,9225,4595,3689141410
Chromosome 17AllAssembled moleculeUnlocalized scaffolds75,472,40274,750,902721,50066174972,239,60471,586,435653,16916,666,13716,666,13721,8223,9233,8616218180
Chromosome 18AllAssembled moleculeUnlocalized scaffolds48,664,39547,448,7591,215,63694435146,600,66645,436,7691,163,8974,989,1014,989,10144,3013,0522,9876544440
Chromosome 19AllAssembled moleculeUnlocalized scaffolds50,019,79149,578,535441,25669412847,769,72847,372,264397,4643,828,9673,828,96726,1193,1143,0862842420
Chromosome 20AllAssembled moleculeUnlocalized scaffolds46,338,00144,557,9581,780,043107396843,948,36542,319,8521,628,5134,074,4374,074,43783,3123,2733,11915440400
Chromosome 21AllAssembled moleculeUnlocalized scaffolds51,266,54450,472,720793,82489474248,111,30347,372,052739,2515,152,9425,152,94238,7102,8722,8244848480
Chromosome 22AllAssembled moleculeUnlocalized scaffolds51,931,09849,145,3162,785,78224811912945,598,39143,045,2902,553,1011,016,1661,119,25948,5696,8176,5182991201200
Chromosome XAllAssembled moleculeUnlocalized scaffolds146,981,136142,054,2084,926,928532253279136,372,298131,921,4814,450,8171,997,5382,039,87625,01310,76910,2884812542540
Chromosome YAllAssembled moleculeUnlocalized scaffolds3,528,0732,853,901674,1727526493,179,2642,606,259573,0052,038,3642,038,36418,5673312428927270
unplacedAssembled molecule98,891,08511,55688,785,14513,4089,6940
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