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ASM1954v1

Organism name:
Clostridium botulinum A3 str. Loch Maree (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: Loch Maree
BioSample:
SAMN02603536
BioProject:
PRJNA28507
Submitter:
Los Alamos National Laboratory
Date:
2008/03/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000019545.1 (latest)
RefSeq assembly accession:
GCF_000019545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 40588 [UID] 20348 [GenBank] 40588 [RefSeq]

See Genome Information for Clostridium botulinum

There are 1430 assemblies for this organism

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History (Show revision history)

Comment

The authors wish to acknowledge the Intelligence Technology Innovation Center for funding the sequencing and the NIH/NIAID for funding the annotation at the Pathema Bioinformatics Resource Center.
For more information about this strain contact Theresa Smith, Integrated Toxicology, United States ... Army Medical Institute of Infectious Diseases, theresa.smith@amedd.army.mil.
The NIAID funded Bioinformatics Resource Center PathoSystems Resource Integration Center (PATRIC; http://patricbrc.vbi.vt.edu/) is responsible for annotation updates of this record.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The authors would like to gratefully acknowledge Dr. Ron Walters for sponsoring this genome sequencing and assembly project.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/07/2023 21:50:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,033
CDSs (total)::3,921
Genes (coding)::3,872
CDSs (with protein)::3,872
Genes (RNA)::112
rRNAs::9, 9, 9 (5S, 16S, 23S)
complete rRNAs::9, 9, 9 (5S, 16S, 23S)
tRNAs::81
ncRNAs::4
Pseudo Genes (total)::49
CDSs (without protein)::49
Pseudo Genes (ambiguous residues)::0 of 49
Pseudo Genes (frameshifted)::14 of 49
Pseudo Genes (incomplete)::36 of 49
Pseudo Genes (internal stop)::17 of 49
Pseudo Genes (multiple problems)::16 of 49
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,259,691
Total ungapped length4,259,691
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000019555.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000962.1=NC_010520.1
Plasmid pCLKCP000963.1=NC_010418.1

Assembly statistics

MoleculeTotal
Length
All4,259,691
Chromosome 3,992,906
Plasmid pCLK266,785

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium botulinum A3 str. Loch MareeClostridium botulinum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001276985.1Clostridium botulinumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001276985.1Clostridium botulinumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.5280.5488.21
Best-match type96.5280.5488.21

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna