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UMD Bos_taurus 2.0

Organism name:
Bos taurus
Infraspecific name:
Breed: Hereford
Submitter:
Center for Bioinformatics and Computational Biology, University of Maryland
Date:
2009/04/30
Assembly level:
Chromosome
Genome representation:
full
GenBank Assembly ID:
GCA_000003055.1 (replaced)
RefSeq Assembly ID:
n/a
RefSeq Assembly and GenBank Assembly Identical:
n/a

IDs: 3298 [UID] 3298 [GenBank]

See Genome Information for Bos taurus

There are 2 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,874,956,119
Total assembly gap length17,401,121
Gaps between scaffolds11,724
Number of scaffolds125,099
Scaffold N501,251,688
Number of contigs187,674
Contig N5079,583
Total number of chromosomes and plasmids30

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Assembly Unit: Primary Assembly (GCA_000001245.1)
Molecule nameGenBank IDRefSeq IDUnlocalized
sequences count
Chromosome 1GK000001.1n/an/a0
Chromosome 2GK000002.1n/an/a0
Chromosome 3GK000003.1n/an/a0
Chromosome 4GK000004.1n/an/a0
Chromosome 5GK000005.1n/an/a0
Chromosome 6GK000006.1n/an/a0
Chromosome 7GK000007.1n/an/a0
Chromosome 8GK000008.1n/an/a0
Chromosome 9GK000009.1n/an/a0
Chromosome 10GK000010.1n/an/a0
Chromosome 11GK000011.1n/an/a0
Chromosome 12GK000012.1n/an/a0
Chromosome 13GK000013.1n/an/a0
Chromosome 14GK000014.1n/an/a0
Chromosome 15GK000015.1n/an/a0
Chromosome 16GK000016.1n/an/a0
Chromosome 17GK000017.1n/an/a0
Chromosome 18GK000018.1n/an/a0
Chromosome 19GK000019.1n/an/a0
Chromosome 20GK000020.1n/an/a0
Chromosome 21GK000021.1n/an/a0
Chromosome 22GK000022.1n/an/a0
Chromosome 23GK000023.1n/an/a0
Chromosome 24GK000024.1n/an/a0
Chromosome 25GK000025.1n/an/a0
Chromosome 26GK000026.1n/an/a0
Chromosome 27GK000027.1n/an/a0
Chromosome 28GK000028.1n/an/a0
Chromosome 29GK000029.1n/an/a0
Chromosome XGK000030.1n/an/a0
unplacedn/an/an/a113,345

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1157,590,899674156,422,7771,173,8123,941673
Chromosome 2138,706,668400137,970,8771,665,5493,068399
Chromosome 3120,659,182403119,903,2161,469,0062,857402
Chromosome 4121,199,298413120,499,1761,328,1362,619412
Chromosome 5120,608,904360119,906,7971,636,1152,743359
Chromosome 6117,573,773685116,708,3871,093,3022,885684
Chromosome 7110,581,274356109,835,4801,751,3172,693355
Chromosome 8111,613,192357110,918,8381,446,3082,597356
Chromosome 9104,709,780350104,153,0201,154,0732,234349
Chromosome 10104,076,415352103,370,2701,423,0782,359351
Chromosome 11106,489,761360105,870,8991,341,9082,418359
Chromosome 1289,210,38255188,593,0481,570,9572,121550
Chromosome 1383,913,05625383,426,5891,953,3121,894252
Chromosome 1484,975,28554384,346,9881,371,4412,006542
Chromosome 1585,187,32737584,608,8651,359,9432,279374
Chromosome 1681,379,33347480,726,8641,001,2842,073473
Chromosome 1772,336,47021971,868,3081,869,5021,665218
Chromosome 1865,547,04343165,032,2741,612,2831,764430
Chromosome 1963,599,50618363,177,7141,391,6001,626182
Chromosome 2071,370,75829270,879,6761,464,9001,854291
Chromosome 2170,576,37022170,124,5861,202,4001,746220
Chromosome 2260,788,04817160,370,6271,342,4761,456170
Chromosome 2351,477,84429351,154,1441,139,1271,141292
Chromosome 2461,547,16913461,242,0351,687,9261,246133
Chromosome 2542,581,93316842,286,6421,050,2111,106167
Chromosome 2651,843,71031751,439,4761,502,8171,351316
Chromosome 2745,665,54622745,311,7921,115,8301,154226
Chromosome 2846,244,72322045,980,0831,034,365965219
Chromosome 2951,016,49328050,591,4051,207,8671,523279
Chromosome X137,141,8611,692136,090,0291,968,5413,1911,691
unplaced244,744,116113,345244,744,1161,95300
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