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ASM16739v1

Organism name:: Campylobacter upsaliensis RM3195 (e-proteobacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: RM3195
BioSample:: SAMN02435831
BioProject:: PRJNA12518
Submitter:: TIGR
Date:: 2005/01/04
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_000167395.1 (latest)
RefSeq assembly accession:: GCF_000167395.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: AAFJ01

IDs: 203458 [UID] 203438 [GenBank] 203458 [RefSeq]

See Genome Information for Campylobacter upsaliensis

Pathogen Detection Resources

There are 853 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000167395.1	=	GCF_000167395.1	ASM16739v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,773,834
Total ungapped length	1,773,834
Gaps between scaffolds	0
Number of scaffolds	20
Scaffold N50	153,933
Scaffold L50	5
Number of contigs	20
Contig N50	153,933
Contig L50	5
Total number of chromosomes and plasmids	2
Number of component sequences (WGS or clone)	20

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Plasmid pCU3	n/a	n/a	n/a	1
Plasmid pCU110	n/a	n/a	n/a	2
unplaced	n/a	n/a	n/a	17

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	1,773,834	20	1,773,834	153,933	0	0
Plasmid pCU3	AllAssembled moleculeUnlocalized scaffolds	3,19603,196	101	3,19603,196	3,19603,196	000	000
Plasmid pCU110	AllAssembled moleculeUnlocalized scaffolds	110,2580110,258	202	110,2580110,258	95,930095,930	000	000
unplaced	Assembled molecule	1,660,380	17	1,660,380	153,933	0	0

	ANI	Query coverage	Subject coverage
Declared type	95.77	82.20	82.80
Best-match type	95.77	82.20	82.80

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ASM16739v1

See Genome Information for Campylobacter upsaliensis

Pathogen Detection Resources

There are 853 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Average Nucleotide Identity (ANI) data

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