NCI_CGAP_Pan1

Library Description

Cloned unidirectionally. Primer: Oligo dT. Average insert size 1.72 kb. Life Technologies catalog #: 11548-013

Source: Robert Strausberg, Ph.D.

Gene Content Analysis

21,536 ESTs from this library were grouped into 8,217 UniGene entries (putative genes) [UniGene build #221, 30-Jul-2009]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs	TPM		UniGene Entry
239	11098		Hs.535192	Eukaryotic translation elongation factor 1 alpha 1.
156	7244		Hs.510635	Immunoglobulin heavy constant gamma 1 (G1m marker).
144	6686		Hs.699841	Immunoglobulin heavy constant alpha 1.
132	6129		Hs.489142	Collagen, type I, alpha 2.
121	5618		Hs.586423	Eukaryotic translation elongation factor 1 alpha 1.
117	5433		Hs.443625	Collagen, type III, alpha 1.
110	5108		Hs.534255	Beta-2-microglobulin.
109	5061		Hs.511605	Annexin A2.
96	4458		Hs.111779	Secreted protein, acidic, cysteine-rich (osteonectin).
89	4133		Hs.514581	Actin, gamma 1.
85	3947		Hs.520640	Actin, beta.
83	3854		Hs.449621	Immunoglobulin kappa constant.
76	3529		Hs.523004	Prosaposin.
74	3436		Hs.516494	Glucagon.
68	3158		Hs.203717	Fibronectin 1.
65	3018		Hs.172928	Collagen, type I, alpha 1.
64	2972		Hs.77961	Major histocompatibility complex, class I, B.
63	2925		Hs.719643	Immunoglobulin lambda locus.
63	2925		Hs.406475	Lumican.
61	2832		Hs.714487	Transcribed locus, moderately similar to NP_001020329.1 CD74 antigen isoform c [Homo sapiens].
59	2740		Hs.450230	Insulin-like growth factor binding protein 3.
55	2554		Hs.628678	Vimentin.
52	2415		Hs.156316	Decorin.
52	2415		Hs.119598	Ribosomal protein L3.
51	2368		Hs.466814	Carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen).
47	2182		Hs.544577	Glyceraldehyde-3-phosphate dehydrogenase.
47	2182		Hs.520348	Ubiquitin C.
44	2043		Hs.186350	Ribosomal protein L4.
44	2043		Hs.125898	GNAS complex locus.
42	1950		Hs.181244	Major histocompatibility complex, class I, A.
38	1764		Hs.481022	Secreted frizzled-related protein 2.
38	1764		Hs.180414	Heat shock 70kDa protein 8.
37	1718		Hs.5662	Guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1.
35	1625		Hs.279806	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5.
34	1579		Hs.669724	Transcribed locus, strongly similar to NP_036454.1 LSM5 homolog, U6 small nuclear RNA associated isoform a [Homo sapiens].
34	1579		Hs.607212	Insulin-like growth factor binding protein 5.
34	1579		Hs.533782	Keratin 8.
33	1532		Hs.520048	Major histocompatibility complex, class II, DR alpha.
32	1486		Hs.821	Biglycan.
30	1393		Hs.534770	Pyruvate kinase, muscle.
30	1393		Hs.517168	Transgelin 2.
29	1347		Hs.644633	TIMP metallopeptidase inhibitor 3.
29	1347		Hs.524910	Ferritin, heavy polypeptide 1.
29	1347		Hs.523185	Ribosomal protein L13a.
29	1347		Hs.351316	Transmembrane 4 L six family member 1.
29	1347		Hs.129673	Eukaryotic translation initiation factor 4A, isoform 1.
28	1300		Hs.681002	Collagen, type I, alpha 1.
28	1300		Hs.371147	Thrombospondin 2.
27	1254		Hs.369397	Transforming growth factor, beta-induced, 68kDa.
27	1254		Hs.2785	Keratin 17.
27	1254		Hs.136348	Periostin, osteoblast specific factor.
26	1207		Hs.654404	Major histocompatibility complex, class I, B.
26	1207		Hs.546285	Ribosomal protein, large, P0.
26	1207		Hs.517155	Prostate transmembrane protein, androgen induced 1.
26	1207		Hs.371889	ATPase, Na+/K+ transporting, alpha 1 polypeptide.
26	1207		Hs.162757	Low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor).
25	1161		Hs.408073	Ribosomal protein S6.
24	1114		Hs.525557	Serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1.
24	1114		Hs.509736	Heat shock protein 90kDa alpha (cytosolic), class B member 1.
24	1114		Hs.410037	Connective tissue growth factor.
24	1114		Hs.370581	CAP, adenylate cyclase-associated protein 1 (yeast).
24	1114		Hs.313	Secreted phosphoprotein 1.
24	1114		Hs.269512	Follistatin-like 1.
23	1068		Hs.534332	Mucin 5AC, oligomeric mucus/gel-forming.
23	1068		Hs.458355	Complement component 1, s subcomponent.
23	1068		Hs.144835	Eukaryotic translation elongation factor 1 gamma.
22	1022		Hs.643683	Integral membrane protein 2B.
22	1022		Hs.594444	Lamin A/C.
22	1022		Hs.517145	Enolase 1, (alpha).
22	1022		Hs.470399	Integrin, beta 6.
22	1022		Hs.410977	Transgelin.
22	1022		Hs.384598	Serpin peptidase inhibitor, clade G (C1 inhibitor), member 1.
22	1022		Hs.374596	Tumor protein, translationally-controlled 1.
21	975		Hs.77274	Plasminogen activator, urokinase.
21	975		Hs.643813	Integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12).
21	975		Hs.444467	Transcribed locus, strongly similar to NP_001395.1 eukaryotic translation elongation factor 1 gamma [Homo sapiens].
21	975		Hs.437178	Acyl-Coenzyme A dehydrogenase, very long chain.
21	975		Hs.420269	Collagen, type VI, alpha 2.
21	975		Hs.370771	Cyclin-dependent kinase inhibitor 1A (p21, Cip1).
21	975		Hs.210283	Collagen, type V, alpha 1.
20	929		Hs.522074	TSC22 domain family, member 3.
20	929		Hs.517033	Transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase).
20	929		Hs.500483	Actin, alpha 2, smooth muscle, aorta.
20	929		Hs.35052	Transcribed locus.
20	929		Hs.233240	Collagen, type VI, alpha 3.
19	882		Hs.658169	Secreted frizzled-related protein 4.
19	882		Hs.591484	Laminin, gamma 2.
19	882		Hs.370247	Amyloid beta (A4) precursor-like protein 2.
19	882		Hs.286221	ADP-ribosylation factor 1.
18	836		Hs.644231	V-ets erythroblastosis virus E26 oncogene homolog 2 (avian).
18	836		Hs.471851	High density lipoprotein binding protein.
18	836		Hs.133527	Transmembrane 4 L six family member 4.
18	836		Hs.118076	Ribosomal protein S4, X-linked.
17	789		Hs.719970	DNA-damage-inducible transcript 4.
17	789		Hs.715525	Thioredoxin interacting protein.
17	789		Hs.708294	Transcribed locus.
17	789		Hs.534797	Catenin (cadherin-associated protein), alpha 1, 102kDa.
17	789		Hs.529053	Complement component 3.
17	789		Hs.522373	Gelsolin (amyloidosis, Finnish type).
17	789		Hs.494173	Annexin A1.

Source: NCBI UniGene

EST Sequences

25,325 EST sequences from this library have been submitted to the public sequence database as of 30-Jul-2009.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

• pancreas
• pancreatic tumor
• unknown developmental stage
• non-normalized

Source: NCBI Clone Registry

References

A small upstream open reading frame causes inhibition of human major vault protein expression from a ubiquitous mRNA splice variant. Holzmann K, et al., FEBS Lett 494, 99-104 (2001).