NIH_ZGC_7

Library Description

Bulk tissue was collected from a whole adult individual from the Tuebingen strain. 1st strand cDNA was primed with a Not I - oligo(dT) primer, double-stranded cDNA was cloned into the Not I and EcoRV sites of pExpress-1. Library was size-selected for >1 kb fragments and normalized. A non-normalized version of this library is also available (NIH_ZGC_10). Library was constructed by Open Biosystems (Huntsville, AL)

Source: Daniela S. Gerhard, Ph.D., National Cancer Institute / NIH

Gene Content Analysis

20,020 ESTs from this library were grouped into 8,235 UniGene entries (putative genes) [UniGene build #126, 19-Jun-2012]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs	TPM		UniGene Entry
55	2747		Dr.33333	Transcribed locus, strongly similar to NP_059333.1 cytochrome c oxidase subunit I [Danio rerio].
43	2148		Dr.935	S-adenosylhomocysteine hydrolase.
26	1299		Dr.124118	Transcribed locus.
25	1249		Dr.162030	Keratin 5.
24	1199		Dr.13436	Uncharacterized LOC796447.
22	1099		Dr.132310	Acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain.
21	1049		Dr.6431	Suppressor of cytokine signaling 3a.
21	1049		Dr.31797	Eukaryotic translation elongation factor 1 alpha 1, like 1.
21	1049		Dr.24246	H1 histone family, member X.
21	1049		Dr.2413	Dual specificity phosphatase 1.
21	1049		Dr.104720	Apolipoprotein A-II.
20	999		Dr.77127	Zgc:66382.
20	999		Dr.76749	Cd63 antigen.
20	999		Dr.17331	Zgc:174863.
20	999		Dr.104534	Uncharacterized protein LOC795545.
19	949		Dr.79369	Zgc:56719.
19	949		Dr.76309	Aldolase b, fructose-bisphosphate.
19	949		Dr.76034	Myoglobin.
19	949		Dr.75522	Glutamic-oxaloacetic transaminase 1, soluble.
18	899		Dr.77654	Secreted immunoglobulin domain 4.
18	899		Dr.75669	Parvalbumin 4.
18	899		Dr.55617	Ribosomal protein, large, P0.
18	899		Dr.51646	Beta-2-microglobulin.
18	899		Dr.4077	Non-metastatic cells 2b.2, protein (NM23B) expressed in.
18	899		Dr.30295	Transcribed locus, strongly similar to NP_989562.2 ADP/ATP translocase 3 [Gallus gallus].
18	899		Dr.16380	Aldehyde dehydrogenase 8 family, member A1.
18	899		Dr.162096	Zgc:77778.
18	899		Dr.106159	Zgc:162730.
17	849		Dr.7740	CD74 molecule, major histocompatibility complex, class II invariant chain a.
17	849		Dr.76600	ChaC, cation transport regulator-like 1.
17	849		Dr.75743	Cystatin C (amyloid angiopathy and cerebral hemorrhage).
16	799		Dr.79210	Glycerol-3-phosphate dehydrogenase 1b.
16	799		Dr.76290	Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1.
16	799		Dr.75775	Apolipoprotein A-Ia.
16	799		Dr.59019	Y box binding protein 1.
16	799		Dr.32351	Lectin, galactoside-binding, soluble, 3 (galectin 3)-like.
16	799		Dr.24504	Poly A binding protein, cytoplasmic 1 a.
16	799		Dr.162032	Zgc:92533.
16	799		Dr.152450	Actin, beta 2.
16	799		Dr.1280	CCAAT/enhancer binding protein (C/EBP), delta.
15	749		Dr.87300	CD36 antigen.
15	749		Dr.80068	Purine nucleoside phosphorylase 4b.
15	749		Dr.77046	Apolipoprotein C-I like.
15	749		Dr.75658	Transferrin-a.
15	749		Dr.75547	Trypsin.
15	749		Dr.43659	Nucleophosmin 1a.
15	749		Dr.37870	Creatine kinase, muscle b.
15	749		Dr.35640	Glyceraldehyde-3-phosphate dehydrogenase.
15	749		Dr.159462	Fructose-1,6-bisphosphatase 1b.
14	699		Dr.84875	Zgc:92249.
14	699		Dr.8435	Chromatin modifying protein 1B.
14	699		Dr.78121	Zgc:64106.
14	699		Dr.77989	Dual specificity phosphatase 5.
14	699		Dr.77226	Transcribed locus.
14	699		Dr.76813	NADH dehydrogenase (ubiquinone) Fe-S protein 8a.
14	699		Dr.75997	Annexin A2a.
14	699		Dr.75607	Voltage-dependent anion channel 3.
14	699		Dr.3613	Ceruloplasmin.
14	699		Dr.23445	Ba1 globin.
14	699		Dr.15359	Parvalbumin 3.
14	699		Dr.1291	SMT3 suppressor of mif two 3 homolog 3a.
14	699		Dr.105154	Glyoxylate reductase/hydroxypyruvate reductase b.
14	699		Dr.104840	Complement factor H like 4.
14	699		Dr.104721	Fatty acid binding protein 10a, liver basic.
13	649		Dr.9829	Phosphodiesterase 6G, cGMP-specific, rod, gamma.
13	649		Dr.77160	Cytochrome P450, family 3, subfamily A, polypeptide 65.
13	649		Dr.77141	Sorting nexin 3.
13	649		Dr.76397	Matrix metalloproteinase 2.
13	649		Dr.76266	Proteasome activator subunit 2.
13	649		Dr.75633	Zgc:77052.
13	649		Dr.75552	Actin, alpha, cardiac muscle 1b.
13	649		Dr.31902	Zgc:92041.
13	649		Dr.2784	Solute carrier family 25 (carnitine/acylcarnitine translocase), member 20.
13	649		Dr.26749	Chaperonin containing TCP1, subunit 3 (gamma).
13	649		Dr.149289	Zgc:174379.
13	649		Dr.125513	Transcribed locus, strongly similar to XP_002667589.2 PREDICTED: mucin-2-like [Danio rerio].
13	649		Dr.115574	CDNA clone IMAGE:6794776.
13	649		Dr.1054	Ribosomal protein S14.
13	649		Dr.104772	Zgc:195154.
13	649		Dr.104595	Transcribed locus, strongly similar to XP_001339274.1 PREDICTED: hypothetical protein LOC798849 [Danio rerio].
13	649		Dr.104472	CDNA clone IMAGE:7088011.
12	599		Dr.9860	Malate dehydrogenase 1b, NAD (soluble).
12	599		Dr.85174	Cathepsin L.1.
12	599		Dr.82774	Saccharopine dehydrogenase b.
12	599		Dr.82044	Cytochrome P450, family 8, subfamily B, polypeptide 3.
12	599		Dr.8194	Opsin 1 (cone pigments), short-wave-sensitive 1.
12	599		Dr.81647	Transcribed locus, strongly similar to XP_688258.2 PREDICTED: zinc finger protein 227-like [Danio rerio].
12	599		Dr.81043	Dual specificity phosphatase 2.
12	599		Dr.78525	Fucosidase, alpha-L- 2, plasma.
12	599		Dr.76663	Solute carrier family 25, member 33.
12	599		Dr.76367	Hypoxia induced gene 1.
12	599		Dr.76274	Phenylalanine hydroxylase.
12	599		Dr.75974	PDZ domain containing 1.
12	599		Dr.75683	Transmembrane emp24 domain trafficking protein 2.
12	599		Dr.75517	Ribosomal protein L34.
12	599		Dr.75124	Wu:fb18c02.
12	599		Dr.737	Jun B proto-oncogene b.
12	599		Dr.4850	Ring finger protein 128a.
12	599		Dr.3780	Microtubule-associated protein 1 light chain 3 alpha.
12	599		Dr.32972	Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase.

Source: NCBI UniGene

EST Sequences

23,638 EST sequences from this library have been submitted to the public sequence database as of 19-Jun-2012.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

• whole body
• adult
• normalized
• bulk

Source: NCBI Clone Registry