RPD3 histone deacetylase homolog (rpd3)

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Finding cDNAs

UGID:507735 UniGene Zm.2498 Zea mays (maize) rpd3

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RPD3 histone deacetylase homolog (rpd3)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
NP_001105019.1	histone deacetylase 6	Z. mays	100.0	700
NP_001078511.1	HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding	A. thaliana	77.8	465
NP_775343.1	histone deacetylase 1	D. rerio	59.9	464
NP_032254.1	histone deacetylase 1	M. musculus	59.3	467
NP_004955.2	histone deacetylase 1	H. sapiens	59.3	467
NP_014069.1	Histone deacetylase; regulates transcription and silencing; Rpd3p	S. cerevisiae	58.9	399
NP_001079396.1	similar to histone deacetylase 1	X. laevis	58.1	474
XP_001695036.1	histone deacetylase	C. reinhardtii	57.5	409
NP_506599.1	Histone DeAcetylase family member (hda-1)	C. elegans	55.6	449
NP_647918.2	Rpd3	D. melanogaster	54.1	492
XP_325004.1	hypothetical protein	N. crassa	50.8	490

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	Restricted Expression:	cell lignification [show more like this]
	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	cDNA Sources:	mixed; other; silk; meristem; tassel; endosperm; cell lignification; aerial organ; unspecified tissue; shoot

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

AF035815.1	Zea mays putative histone deacetylase RPD3 mRNA, complete cds	PA
AY112571.2	Zea mays CL997_1 mRNA sequence	P
AY109408.1	Zea mays CL14611_1 mRNA sequence	P
AF322918.1	Zea mays HDA1 mRNA, complete cds	PA
NM_001111549.1	Zea mays RPD3 histone deacetylase homolog (rpd3), mRNA	PA
BT033627.1	Zea mays full-length cDNA clone ZM_BFc0117E18 mRNA, complete cds	P
BT035374.1	Zea mays full-length cDNA clone ZM_BFb0058C19 mRNA, complete cds	P
EU952105.1	Zea mays clone 1165199 histone deacetylase 6 mRNA, complete cds	PA
BT066276.1	Zea mays full-length cDNA clone ZM_BFc0160D03 mRNA, complete cds	P
EZ060042.1	TSA: Zea mays contig61164, mRNA sequence
EZ059731.1	TSA: Zea mays contig60853, mRNA sequence
EZ049622.1	TSA: Zea mays contig50740, mRNA sequence	P
EZ088565.1	TSA: Zea mays contig24211, mRNA sequence

EST sequences (10 of 66) [Show all sequences]

BI096790.1		meristem		P
BG840644.2	Clone MEST14-A05	silk	5' read	PA
BG840966.2	Clone MEST14-A05	silk	3' read	P
BG517780.1		aerial organ
BE238824.1		tassel		P
BE186631.1		tassel		P
AW256098.1		other		P
AW258010.1		other
AW324647.1		mixed		P
AW216192.1		other		P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria