Chordin (chrd)

NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs

UGID:489413 UniGene Xl.3549 Xenopus laevis (African clawed frog) chrd

Order cDNA clone, Links

Chordin (chrd)

African clawed frog protein-coding gene chrd. Represented by 464 ESTs from 15 cDNA libraries. Corresponds to reference sequence NM_001088309.1. [UniGene 489413 - Xl.3549]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_001081778.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	chordin precursor	X. laevis	100.0	940
NP_571048.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	chd gene product	D. rerio	62.7	934
NP_034023.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	chordin precursor	M. musculus	60.2	904
NP_003732.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	chordin precursor	H. sapiens	59.4	911
Other hits (2 of 19) [Show all]		Species	Id(%)	Len(aa)
NP_001136129.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	chordin precursor	X. tropicalis	95.8	940
XP_003227655.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: chordin-like	A. carolinensis	66.7	932

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	endomesoderm; whole body; ectoderm; dorsal lip; fat body; tail

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

L35764.1	Xenopus laevis chordin mRNA, complete cds	P
BC077767.1	Xenopus laevis chordin, mRNA (cDNA clone MGC:79971 IMAGE:5161617), complete cds	PA
DQ096971.1	Xenopus laevis chrd mRNA, complete sequence	P
NM_001088309.1	Xenopus laevis chordin (chrd), mRNA	P

EST sequences (10 of 464) [Show all sequences]

BG019466.1	Clone IMAGE:3437942	dorsal lip	5' read	P
BG022061.1	Clone IMAGE:3749426	whole body	3' read	P
BF610870.1	Clone IMAGE:3437942	dorsal lip	3' read	P
BF614600.1	Clone IMAGE:3749025	whole body	5' read	P
BF614694.1	Clone IMAGE:3749161	whole body	5' read
BF615069.1	Clone IMAGE:3749550	whole body	5' read	P
BF615282.1	Clone IMAGE:3749426	whole body	5' read	P
BE575465.1	Clone IMAGE:3401049	whole body	3' read	A
AW460332.1	Clone IMAGE:2942746	whole body	5' read	P
AW460504.1	Clone IMAGE:2942746	whole body	3' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria