Y box binding protein 2 (ybx2)

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UGID:2872187 UniGene Str.64812 Xenopus tropicalis (western clawed frog) ybx2

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Y box binding protein 2 (ybx2)

Western clawed frog protein-coding gene ybx2. Represented by 130 ESTs from 17 cDNA libraries. Corresponds to reference sequence NM_001130195.1. [UniGene 2872187 - Str.64812]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_001123667.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	ybx2 gene product	X. tropicalis	100.0	336
NP_001081274.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Y-box-binding protein 2-A	X. laevis	93.8	335
NP_057066.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Y-box-binding protein 2	H. sapiens	74.1	340
NP_058571.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Y-box-binding protein 2	M. musculus	73.3	322
NP_496366.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Protein CEY-1	C. elegans	63.8	149
NP_571695.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	nuclease-sensitive element-binding protein 1 isoform 2	D. rerio	63.3	307
NP_524033.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	ypsilon schachtel, isoform A	D. melanogaster	52.2	343
Other hits (2 of 37) [Show all]		Species	Id(%)	Len(aa)
XP_002719041.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: Y box binding protein 2	O. cuniculus	81.7	262
XP_003212408.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: nuclease-sensitive element-binding protein 1-like, partial	M. gallopavo	81.3	133

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	cDNA Sources:	testis; whole body; oviduct; lung; intestine; adipose tissue

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

	BC166950.1	Xenopus tropicalis hypothetical protein LOC100170415, mRNA (cDNA clone MGC:188978 IMAGE:7857209), complete cds	PA
	NM_001130195.1	Xenopus (Silurana) tropicalis Y box binding protein 2 (ybx2), mRNA	PA

EST sequences (10 of 130) [Show all sequences]

BG812360.1	Clone IMAGE:4461251	whole body	3' read	P
BG884690.1	Clone IMAGE:4461251	whole body	5' read	P
BG816197.1	Clone IMAGE:4464695	whole body	5' read	P
BG810634.1	Clone IMAGE:4464695	whole body	3' read	P
AL629134.2	Clone TGas011c13	whole body	5' read	A
AL682376.2	Clone TGas067c24	whole body	5' read	P
AL784157.2	Clone TGas082a19	whole body	5' read
AL877113.2	Clone TEgg053o22	whole body	5' read	P
CF239699.1	Clone IMAGE:6995002	whole body	5' read	P
CF589292.1	Clone IMAGE:7021787	whole body	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria