> RAN binding protein 2 (ranbp2)
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UGID:2428137     UniGene Str.52796     Xenopus tropicalis (western clawed frog)   ranbp2 Links
RAN binding protein 2 (ranbp2)

Western clawed frog protein-coding gene ranbp2. Represented by 153 ESTs from 23 cDNA libraries. [UniGene 2428137 - Str.52796]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_002937704.1 PREDICTED: e3 SUMO-protein ligase RanBP2 isoform 1 X. tropicalis 100.0 2841
NP_035370.2 Ranbp2 gene product M. musculus 63.0 2873
NP_006258.3 RANBP2 gene product H. sapiens 61.1 3044
NP_001079764.1 RAN binding protein 1 X. laevis 56.6 203
XP_002663326.2 PREDICTED: e3 SUMO-protein ligase RanBP2 D. rerio 55.2 2780
XP_956707.1 ran-specific GTPase-activating protein 1 N. crassa 50.2 209
XP_001694482.1 RAN binding protein, RANBP1 C. reinhardtii 48.9 132
NP_010285.1 Yrb1p S. cerevisiae 48.5 198
NP_180567.1 Ran-binding protein 1-b A. thaliana 47.0 215
Other hits (2 of 42) [Show all]SpeciesId(%)Len(aa)
XP_531768.4 PREDICTED: E3 SUMO-protein ligase RanBP2 C. lupus familiaris 65.4 2040
XP_001914708.2 PREDICTED: LOW QUALITY PROTEIN: e3 SUMO-protein ligase RanBP2 E. caballus 65.2 2043

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
cDNA Sources: testis; whole body; lung; ovary; liver; brain; oviduct; head; heart; skin
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (1)

BC157559.1 Xenopus tropicalis RAN binding protein 2, mRNA (cDNA clone IMAGE:7864196), partial cds PA

Model sequences (2)

XM_002937659.1 PREDICTED: Xenopus (Silurana) tropicalis RAN binding protein 2, transcript variant 2 (ranbp2), mRNA P
XM_002937658.1 PREDICTED: Xenopus (Silurana) tropicalis RAN binding protein 2, transcript variant 1 (ranbp2), mRNA P

EST sequences (10 of 153) [Show all sequences]

AL653420.2 Clone TGas042h01 whole body 5' read P
AL773809.2 Clone TGas071g12 whole body 5' read P
AL959477.2 Clone TGas087b06 whole body 5' read P
AL650557.2 Clone TNeu029o14 whole body 5' read P
AL797819.2 Clone TNeu129i08 whole body 5' read P
AL846471.2 Clone TEgg007a23 whole body 5' read P
AL849183.2 Clone TEgg002h14 whole body 5' read P
AL864661.2 Clone TEgg131k03 whole body 5' read P
AL872719.2 Clone TEgg135l09 whole body 5' read P
AL881956.2 Clone TEgg043l03 whole body 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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