Interferon regulatory factor 1 (irf1)

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UGID:460350 UniGene Str.4753 Xenopus tropicalis (western clawed frog) irf1

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Interferon regulatory factor 1 (irf1)

Western clawed frog protein-coding gene irf1. Represented by 39 ESTs from 14 cDNA libraries. Corresponds to reference sequence NM_001006694.1. [UniGene 460350 - Str.4753]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_001006695.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	irf1 gene product	X. tropicalis	100.0	301
NP_001085588.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	MGC82544 protein	X. laevis	88.7	301
NP_001152865.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Irf1 gene product	M. musculus	74.5	267
NP_002189.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	IRF1 gene product	H. sapiens	71.1	322
NP_991310.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	irf1b gene product	D. rerio	63.0	262
Other hits (2 of 27) [Show all]		Species	Id(%)	Len(aa)
NP_036723.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Irf1 gene product	R. norvegicus	75.7	267
NP_001009751.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	IRF1 gene product	O. aries	74.5	274

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	cDNA Sources:	intestine; whole body; spleen; oviduct; lung; thymus; limb; liver

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

	BC075398.1	Xenopus tropicalis interferon regulatory factor 1, mRNA (cDNA clone MGC:89137 IMAGE:7007367), complete cds	PA
	NM_001006694.1	Xenopus (Silurana) tropicalis interferon regulatory factor 1 (irf1), mRNA	PA

EST sequences (10 of 39) [Show all sequences]

BQ388687.1	Clone IMAGE:5307280	whole body	3' read	A
CF345059.1	Clone IMAGE:6998887	whole body	5' read
CF345060.1	Clone IMAGE:6998887	whole body	5' read	P
CF375231.1	Clone IMAGE:7007367	whole body	5' read	P
CF375232.1	Clone IMAGE:7007367	whole body	3' read
BX721130.1	Clone TTpA044n03	whole body	5' read	P
BX721131.1	Clone TTpA044n03	whole body	3' read	A
CX392477.2	Clone IMAGE:7615931	whole body	3' read
CX392478.2	Clone IMAGE:7615931	whole body	5' read	A
CX966933.1	Clone IMAGE:7710846	intestine	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria