F-box protein 5 (fbxo5)

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Finding cDNAs

UGID:1676589 UniGene Str.44195 Xenopus tropicalis (western clawed frog) fbxo5

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F-box protein 5 (fbxo5)

Western clawed frog protein-coding gene fbxo5. Represented by 61 ESTs from 16 cDNA libraries. Corresponds to reference sequence NM_001044469.1. [UniGene 1676589 - Str.44195]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_001037934.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	fbxo5 gene product	X. tropicalis	100.0	390
NP_001089481.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	F-box only protein 5-B	X. laevis	88.3	383
NP_001135994.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	FBXO5 gene product	H. sapiens	48.1	400
NP_080271.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	F-box only protein 5	M. musculus	46.8	386
Other hits (2 of 14) [Show all]		Species	Id(%)	Len(aa)
XP_003204178.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: f-box only protein 5-like	M. gallopavo	54.3	338
XP_002187772.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: similar to F-box protein 5	T. guttata	53.5	339

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources.
	cDNA Sources:	whole body; testis; ovary; thymus; head

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

	CR761353.2	Xenopus tropicalis finished cDNA, clone TEgg046m03	PA
	NM_001044469.1	Xenopus (Silurana) tropicalis F-box protein 5 (fbxo5), mRNA	PA

EST sequences (10 of 61) [Show all sequences]

BG886272.1	Clone IMAGE:4462805	whole body	3' read	A
AL672391.2	Clone TGas056m05	whole body	5' read	P
AL680867.2	Clone TGas070n06	whole body	5' read	P
AL961950.2	Clone TGas125f19	whole body	5' read	P
AL962627.2	Clone TGas108c03	whole body	5' read	P
AL971191.2	Clone TGas101f16	whole body	5' read	P
AL655963.2	Clone TNeu033b12	whole body	5' read	P
AL673630.2	Clone TNeu062o04	whole body	5' read	P
AL673855.2	Clone TNeu061m05	whole body	5' read
AL791093.2	Clone TNeu117g05	whole body	5' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria