Os06g0103300 (Os06g0103300)

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Finding cDNAs

UGID:365403 UniGene Os.11622 Oryza sativa (rice) Os06g0103300

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Os06g0103300 (Os06g0103300)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
NP_001056540.1	Os06g0103300	O. sativa	100.0	469
NP_200219.1	HGO (HOMOGENTISATE 1,2-DIOXYGENASE); homogentisate 1,2-dioxygenase	A. thaliana	83.7	454
NP_001087504.1	MGC82288 protein	X. laevis	66.5	436
NP_694498.2	homogentisate 1,2-dioxygenase	D. rerio	66.5	430
NP_000178.2	homogentisate 1,2-dioxygenase	H. sapiens	65.8	433
NP_492433.1	HomoGentisate Oxidase family member (hgo-1)	C. elegans	64.6	429
NP_038575.2	homogentisate 1,2-dioxygenase	M. musculus	64.5	440
NP_523544.2	homogentisate 1,2-dioxygenase	D. melanogaster	62.7	432
XP_001701781.1	predicted protein	C. reinhardtii	59.8	427
XP_325354.1	hypothetical protein	N. crassa	57.0	442

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	leaf; stem; flower; callus; panicle; whole plant; root; unspecified tissue; mixed; other

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

AK065189.1	Oryza sativa Japonica Group cDNA clone:J013002E07, full insert sequence	P
AK062144.1	Oryza sativa Japonica Group cDNA clone:001-045-G08, full insert sequence	P
NM_001063075.1	Oryza sativa (japonica cultivar-group) Os06g0103300 (Os06g0103300) mRNA, complete cds	P
CT833402.1	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN074C03, full insert sequence	P

EST sequences (10 of 91) [Show all sequences]

AU091710.1	Clone S20131	leaf		P
AU055892.1	Clone S20131_2Z	leaf		PA
BM419105.1	Clone R009D11	leaf		A
BQ908811.1	Clone T015E11	leaf		A
CB642063.1	Clone OSJNEb02A17	leaf	5' read	P
CB642064.1	Clone OSJNEb02A17	leaf	3' read	P
CB651956.1	Clone OSJNEc01D15	leaf	5' read	P
CB658797.1	Clone OSJNEc15B21	leaf	3' read	P
CB662950.1	Clone OSJNEd07G20	leaf	5' read	P
CB667256.1	Clone OSJNEd14I02	leaf	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria