|
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (Smarcc1)
Mouse protein-coding gene Smarcc1. Represented by 566 ESTs from 199 cDNA libraries. Corresponds to reference sequence NM_009211.2. [UniGene 276386 - Mm.85410]
SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
| Best Hits and Hits from model organisms | Species | Id(%) | Len(aa) |
|
|
Smarcc1 gene product |
M. musculus |
100.0 |
1103 |
|
|
SWI/SNF complex subunit SMARCC1 |
H. sapiens |
97.7 |
1102 |
|
|
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 |
X. laevis |
86.2 |
1075 |
|
|
PREDICTED: SWI/SNF complex subunit SMARCC1 |
D. rerio |
81.4 |
1082 |
|
|
moira, isoform A |
D. melanogaster |
61.0 |
1186 |
|
|
Protein SWSN-1, isoform c |
C. elegans |
57.2 |
771 |
|
|
hypothetical protein NCU08003 |
N. crassa |
46.2 |
653 |
| Other hits (2 of 41) [Show all] | Species | Id(%) | Len(aa) |
|
|
SWI/SNF complex subunit SMARCC1 |
R. norvegicus |
99.4 |
1073 |
|
|
PREDICTED: SWI/SNF complex subunit SMARCC1 |
E. caballus |
98.7 |
995 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
|
EST Profile: | Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this] |
|
GEO Profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
|
cDNA Sources: |
embryonic tissue; eye; brain; mammary gland; mixed; thymus; pancreas; lung; testis; uncharacterized tissue; pituitary gland; bone marrow; spleen; prostate; blood; skin; connective tissue; lymph node; intestine; heart; kidney; extraembryonic tissue; stomach; ovary; joint; vagina; bone; bladder; inner ear; fertilized ovum; liver; spinal cord; dorsal root ganglion |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
|
Chromosome: |
9 |
|
Map position: |
9 F2|9 |
|
UniSTS entry: |
Chr 9 |
RH135873 |
|
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (24)
|
BC052423.1 |
Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone MGC:63359 IMAGE:6400646), complete cds |
PA |
|
BC053064.1 |
Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone IMAGE:6406352), partial cds |
PA |
|
BC056375.1 |
Mus musculus cDNA clone IMAGE:6849302, containing frame-shift errors |
PA |
|
AK216911.1 |
Mus musculus cDNA, clone:Y2G0140A06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058169, based on BLAT search |
P |
|
AK204398.1 |
Mus musculus cDNA, clone:Y1G0148E18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058169, based on BLAT search |
P |
|
AK199699.1 |
Mus musculus cDNA, clone:Y1G0132C03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058169, based on BLAT search |
P |
|
AK187337.1 |
Mus musculus cDNA, clone:Y0G0141E22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058169, based on BLAT search |
|
|
AK185018.1 |
Mus musculus cDNA, clone:Y0G0132F05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000035057, based on BLAT search |
P |
|
AK184118.1 |
Mus musculus cDNA, clone:Y0G0128L01, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058169, based on BLAT search |
P |
|
AK183841.1 |
Mus musculus cDNA, clone:Y0G0127H18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000035057, based on BLAT search |
P |
|
AK181148.1 |
Mus musculus cDNA, clone:Y0G0117B19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058169, based on BLAT search |
P |
|
AK133922.1 |
Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730526N03 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, full insert sequence |
P |
|
AK143485.1 |
Mus musculus 8 cells embryo 8 cells cDNA, RIKEN full-length enriched library, clone:E860013E10 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, full insert sequence |
P |
|
AK164859.1 |
Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930027J24 product:unclassifiable, full insert sequence |
|
|
AK132659.1 |
Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921508H18 product:unclassifiable, full insert sequence |
|
|
AK145352.1 |
Mus musculus 4 cells embryo 4 cells cDNA, RIKEN full-length enriched library, clone:I0C0020M08 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, full insert sequence |
P |
|
AK144631.1 |
Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730014K04 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, full insert sequence |
P |
|
AK162918.1 |
Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330036L16 product:unclassifiable, full insert sequence |
|
|
AK144122.1 |
Mus musculus kidney CCL-142 RAG cDNA, RIKEN full-length enriched library, clone:G430026A06 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, full insert sequence |
P |
|
AK140381.1 |
Mus musculus adult male cortex cDNA, RIKEN full-length enriched library, clone:B530045L07 product:unclassifiable, full insert sequence |
|
|
AK143513.1 |
Mus musculus 8 cells embryo 8 cells cDNA, RIKEN full-length enriched library, clone:E860117K23 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, full insert sequence |
P |
|
U85614.1 |
Mus musculus SRG3 mRNA, complete cds |
P |
|
NM_009211.2 |
Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (Smarcc1), mRNA |
PA |
|
BC022173.1 |
Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone IMAGE:4013032) |
PA |
EST sequences (10 of 566) [Show all sequences]
|
CA563347.1 |
Clone NIA:K0312H02_IMAGE:30055477 |
bone |
5' read |
|
|
CA572022.1 |
Clone NIA:K0528B02_IMAGE:30066541 |
bone marrow |
5' read |
P |
|
CA749649.1 |
Clone IMAGE:6831966 |
brain |
5' read |
P |
|
CA751289.1 |
Clone IMAGE:6830717 |
brain |
5' read |
P |
|
BY012319.1 |
Clone G730032F19 |
lung |
5' read |
P |
|
BY014067.1 |
Clone G730044H22 |
lung |
5' read |
P |
|
BY014681.1 |
Clone G730047I07 |
lung |
5' read |
P |
|
BY017677.1 |
Clone G830023N19 |
mammary gland |
5' read |
|
|
BY018534.1 |
Clone G830028N02 |
mammary gland |
5' read |
|
|
BY020453.1 |
Clone G830041J03 |
mammary gland |
5' read |
|
Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
|
|
