5-hydroxytryptamine (serotonin) receptor 1F (Htr1f)

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UGID:257993 UniGene Mm.5040 Mus musculus (mouse) Htr1f

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5-hydroxytryptamine (serotonin) receptor 1F (Htr1f)

Mouse protein-coding gene Htr1f. Represented by 7 ESTs from 4 cDNA libraries. Corresponds to reference sequence NM_008310.3. [UniGene 257993 - Mm.5040]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_032336.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	5-hydroxytryptamine receptor 1F	M. musculus	100.0	365
NP_000857.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	5-hydroxytryptamine receptor 1F	H. sapiens	95.1	365
XP_001344430.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: 5-hydroxytryptamine receptor 1F	D. rerio	63.6	338
Other hits (2 of 20) [Show all]		Species	Id(%)	Len(aa)
NP_068629.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	5-hydroxytryptamine (serotonin) receptor 1F	R. norvegicus	96.4	365
NP_001182198.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	5-hydroxytryptamine receptor 1F	P. troglodytes	95.1	365

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources.
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	brain; spinal cord

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	16
Map position:	16 C1.3\|16 37.1 cM
UniSTS entry:	Chr 16	Htr1f
UniSTS entry:	Chr 16	Htr1f

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

AK045364.1	Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230106O20 product:5-HYDROXYTRYPTAMINE 1F RECEPTOR (5-HT-1F) (SEROTONIN RECEPTOR) (5-HT-1E-BETA), full insert sequence	P
BC120507.1	Mus musculus 5-hydroxytryptamine (serotonin) receptor 1F, mRNA (cDNA clone MGC:155744 IMAGE:40129430), complete cds	P
BC137604.1	Mus musculus 5-hydroxytryptamine (serotonin) receptor 1F, mRNA (cDNA clone MGC:169228 IMAGE:8860623), complete cds	P
Z14224.1	M.musculus mRNA for 5HT1E beta serotonin receptor	P
NM_008310.3	Mus musculus 5-hydroxytryptamine (serotonin) receptor 1F (Htr1f), mRNA	PA

EST sequences (7)

BY296136.1	Clone K530342B05	brain	5' read	P
BB185061.1	Clone A330019C10	spinal cord	3' read	A
BB266662.1	Clone A830026M01	brain	3' read	A
BB266888.1	Clone A830027N04	brain	3' read	A
BB268695.1	Clone A830036F08	brain	3' read	A
BB303820.2	Clone B230106O20	brain	3' read
BB643744.1	Clone B230106O20	brain	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria