> Forkhead box A1 (Foxa1)
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UGID:257694     UniGene Mm.4578     Mus musculus (mouse)   Foxa1 Order cDNA clone, Links
Forkhead box A1 (Foxa1)

Mouse protein-coding gene Foxa1. Represented by 306 ESTs from 35 cDNA libraries. Corresponds to reference sequence NM_008259.3. [UniGene 257694 - Mm.4578]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_032285.2 hepatocyte nuclear factor 3-alpha M. musculus 100.0 467
NP_004487.2 FOXA1 gene product H. sapiens 96.2 471
NP_001080063.1 forkhead box protein A1-B X. laevis 75.2 426
NP_571359.1 foxa1 gene product D. rerio 70.8 423
NP_524542.1 fork head, isoform A D. melanogaster 52.5 421
NP_494704.1 Protein LIN-31 C. elegans 50.4 231
Other hits (2 of 40) [Show all]SpeciesId(%)Len(aa)
XP_002805074.1 PREDICTED: hepatocyte nuclear factor 3-alpha-like isoform 2 M. mulatta 97.0 436
XP_003901770.1 PREDICTED: hepatocyte nuclear factor 3-alpha isoform 1 P. anubis 96.8 469

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: intestine; stomach; brain; mammary gland; embryonic tissue; prostate; pituitary gland; lung; bladder; salivary gland; mixed; uncharacterized tissue; pancreas
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12 C1|12 24.7 cM
UniSTS entry: Chr 12 PMC316377P6
UniSTS entry: Chr 12 PMC316473P1
UniSTS entry: Chr 12 Foxa1
UniSTS entry: Chr 12 Foxa1
UniSTS entry: Chr 12 Foxa1
UniSTS entry: Chr 12 Foxa1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

L10408.1 Mouse fork head related protein mRNA, partial cds P
BC096524.1 Mus musculus forkhead box A1, mRNA (cDNA clone MGC:106671 IMAGE:5720113), complete cds PA
AB231452.1 Mus musculus liver hepatoma CRL-1830 Hepa1-6 cDNA, clone:VZZZZZZA01 P
U44752.1 Mus musculus hepatocyte nuclear factor 3 alpha (HNF-3A) mRNA, complete cds P
X74936.1 M.musculus HNF-3alpha mRNA PA
NM_008259.3 Mus musculus forkhead box A1 (Foxa1), mRNA P

EST sequences (10 of 306) [Show all sequences]

BY374506.1 Clone G630068B21 brain 3' read A
BY374526.1 Clone G630068K07 brain 3' read A
BY442173.1 Clone I920179D19 stomach 3' read A
CB057879.1 Clone IMAGE:4315238 pituitary gland 5' read
CB249428.1 Clone IMAGE:5720113 brain 5' read P
CB337389.1 intestine 5' read
CB597995.1 Clone IMAGE:30300208 mixed 5' read
CB933842.1 intestine 5' read
CB933980.1 intestine 5' read
CB934033.1 intestine 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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