> Sodium channel, voltage-gated, type III, alpha (Scn3a)
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UGID:1129292     UniGene Mm.330256     Mus musculus (mouse)   Scn3a Links
Sodium channel, voltage-gated, type III, alpha (Scn3a)

Mouse protein-coding gene Scn3a. Represented by 55 ESTs from 29 cDNA libraries. Corresponds to reference sequence NM_018732.3. [UniGene 1129292 - Mm.330256]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_061202.3 sodium channel, voltage-gated, type III, alpha M. musculus 100.0 1946
NP_001075145.1 SCN3A gene product H. sapiens 97.8 1950
NP_001038360.1 scn1lab gene product D. rerio 80.4 1995
NP_001188644.1 paralytic, isoform AW D. melanogaster 52.6 1972
Other hits (2 of 37) [Show all]SpeciesId(%)Len(aa)
NP_037251.1 Scn3a gene product R. norvegicus 99.0 1950
XP_001152557.1 PREDICTED: sodium channel protein type 3 subunit alpha isoform 7 P. troglodytes 97.8 1950

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; sympathetic ganglion; embryonic tissue; eye; pituitary gland; lymph node; mixed; lung; intestine; nasopharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2 C1.3|2 38.55 cM
UniSTS entry: Scn1a
UniSTS entry: Scn3a
UniSTS entry: Scn3a
UniSTS entry: Scn1a
UniSTS entry: Scn1a
UniSTS entry: Scn1a
UniSTS entry: Scn2a1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AK048407.1 Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130058B11 product:unclassifiable, full insert sequence
AJ810517.1 Mus musculus partial mRNA for voltage-gated sodium channel alpha subunit Nav1.3 (Scn3a gene) P
AK148712.1 Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120438F03 product:similar to Type IV sodium channel alpha polypeptide (Fragment) [Homo sapiens], full insert sequence P
DQ993539.1 Mus musculus clone m3a voltage-gated sodium channel type III (Scn3a) mRNA, 5' UTR, alternatively spliced
AM905321.1 Mus musculus partial mRNA for sodium channel Nav1.3 (Scn3a gene), strain C57BL/6, variant 2 (exon 17A, 92 nt, plus exon 17B) P
AM905320.1 Mus musculus partial mRNA for sodium channel Nav1.3 (Scn3a gene), strain C57BL/6, variant 1 (exon 17A, 83 nt, plus exon 17B) P
NM_018732.3 Mus musculus sodium channel, voltage-gated, type III, alpha (Scn3a), mRNA P

EST sequences (10 of 55) [Show all sequences]

BY003234.1 Clone E530111G14 brain 5' read
BY725166.1 Clone A830023A05 brain 5' read P
CB233156.1 Clone IMAGE:30245614 pituitary gland 5' read
CB233502.1 Clone IMAGE:30249897 pituitary gland 5' read
CB520657.1 Clone IMAGE:6840500 brain 5' read P
CD348085.1 Clone IMAGE:6851531 brain 5' read P
CD349127.1 Clone IMAGE:6855299 brain 5' read
BX513781.1 Clone IMAGp998P191569_;_IMAGE:644994 lymph node 5' read A
CD803132.1 Clone IMAGE:30543465 brain 5' read
CK781052.1 Clone IMAGE:30616344 brain 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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