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Finding cDNAs
UGID:1129117     UniGene Mm.330081     Mus musculus (mouse)   Lmx1a Order cDNA clone, Links
LIM homeobox transcription factor 1 alpha (Lmx1a)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_387501.1 LIM homeobox transcription factor 1 alpha M. musculus 100.0 381
NP_001099437.2 LIM homeobox transcription factor 1 alpha R. norvegicus 100.0 381
NP_796372.1 LIM homeobox transcription factor 1, alpha isoform a H. sapiens 97.1 381
NP_001083902.1 LIM homeobox protein 1b X. laevis 70.6 376
NP_001020338.1 LIM homeobox transcription factor 1, beta 1 D. rerio 67.5 374

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: inner ear [show more like this]
cleavage [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; inner ear; brain
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1 H2.3|1 88.2 cM
UniSTS entry: Chr 1 (n/a)
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

AK044944.1 Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130014N10 product:LIM homeobox transcription factor 1 alpha, full insert sequence P
BC109168.2 Mus musculus LIM homeobox transcription factor 1 alpha, mRNA (cDNA clone MGC:129357 IMAGE:40048181), complete cds P
BC109167.2 Mus musculus LIM homeobox transcription factor 1 alpha, mRNA (cDNA clone MGC:129356 IMAGE:40048180), complete cds P
AF226662.1 Mus musculus lim homeodomain-containing transcription factor (Lmx1a) mRNA, complete cds P
NM_033652.5 Mus musculus LIM homeobox transcription factor 1 alpha (Lmx1a), mRNA P

EST sequences (15)

BY235448.1 Clone F930041O08 inner ear 5' read P
BY595168.1 Clone F930041O08 inner ear 3' read A
BX521209.1 Clone IMAGp952I082_;_IMAGE:317647 embryonic tissue A
BX528773.1 Clone IMAGp998I041983_;_IMAGE:803787 embryonic tissue
CV884171.1 Clone IMAGE:6734439 brain 5' read P
W11485.1 Clone IMAGE:317647 embryonic tissue 5' read A
AA414521.1 Clone IMAGE:792038 embryonic tissue 5' read
AA422951.1 Clone IMAGE:803787 embryonic tissue 5' read
AA692281.1 Clone IMAGE:1124279 embryonic tissue 5' read
BB292827.2 Clone B130014N10 embryonic tissue 3' read
AL363588.1 Clone K9322B22 embryonic tissue 5' read
BB643171.1 Clone B130014N10 embryonic tissue 5' read P
BB651549.1 Clone C230091L22 brain 5' read
BB849700.1 Clone F930102F02 inner ear 5' read P
BU147568.1 Clone IMAGE:6335892 inner ear 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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