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UGID:1099433     UniGene Mm.300397     Mus musculus (mouse)   Whrn
Whirlin (Whrn)

Mouse protein-coding gene Whrn. Represented by 88 ESTs from 55 cDNA libraries. Corresponds to 9 reference sequences (different isoforms). [UniGene 1099433 - Mm.300397]

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; eye; thymus; pancreas; kidney; uncharacterized tissue; embryonic tissue; inner ear; testis; skin; ovary; pineal gland; mammary gland; mixed; salivary gland; liver
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4 C1|4 33.97 cM
UniSTS entry: Chr 4 AW122018
UniSTS entry: Chr 4 AW742671
UniSTS entry: AW530332
UniSTS entry: Chr 4 Whrn
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (28)

AK039124.1 Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230098N07 product:hypothetical protein, full insert sequence
AK122523.1 Mus musculus mRNA for mKIAA1526 protein P
AK196362.1 Mus musculus cDNA, clone:Y1G0121J23, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000063650, based on BLAT search
AK190484.1 Mus musculus cDNA, clone:Y1G0102O06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000035492, based on BLAT search
AY739122.1 Mus musculus whirlin isoform 9 mRNA, complete cds P
AY739121.1 Mus musculus whirlin isoform 8 mRNA, complete cds P
AY739120.1 Mus musculus whirlin isoform 7 mRNA, complete cds P
AY739119.1 Mus musculus whirlin isoform 6 mRNA, complete cds P
AY739118.1 Mus musculus whirlin isoform 5 mRNA, complete cds P
AY739117.1 Mus musculus whirlin isoform 4 mRNA, complete cds P
AY739116.1 Mus musculus whirlin isoform 3 mRNA, complete cds P
AY739115.1 Mus musculus whirlin isoform 2 mRNA, complete cds P
AY739114.1 Mus musculus whirlin isoform 1 mRNA, complete cds P
NM_028640.1 Mus musculus whirlin (Whrn), transcript variant 1, mRNA P
NM_001008791.1 Mus musculus whirlin (Whrn), transcript variant 2, mRNA P
NM_001008798.1 Mus musculus whirlin (Whrn), transcript variant 9, mRNA P
NM_001008797.1 Mus musculus whirlin (Whrn), transcript variant 8, mRNA P
NM_001008796.1 Mus musculus whirlin (Whrn), transcript variant 7, mRNA P
NM_001008795.1 Mus musculus whirlin (Whrn), transcript variant 6, mRNA P
NM_001008794.1 Mus musculus whirlin (Whrn), transcript variant 5, mRNA P
NM_001008793.1 Mus musculus whirlin (Whrn), transcript variant 4, mRNA P
NM_001008792.1 Mus musculus whirlin (Whrn), transcript variant 3, mRNA P
AK157955.1 Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930011M09 product:whirlin, full insert sequence P
BC150757.1 Mus musculus whirlin, mRNA (cDNA clone MGC:183668 IMAGE:9087668), complete cds P
HQ148553.1 Mus musculus whirlinNT1 (Whrn) mRNA, complete cds, alternatively spliced A
HQ148552.1 Mus musculus whirlinNT2 (Whrn) mRNA, complete cds, alternatively spliced A
AK021254.1 Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430046P22 product:hypothetical protein, full insert sequence P
AK004110.1 Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110035G07 product:unclassifiable, full insert sequence P

EST sequences (88)

BY373769.1 Clone G630034N24 testis 3' read
BY374652.1 Clone G630073P17 testis 3' read
BY477857.1 Clone G370081K12 skin 3' read
BY540012.1 Clone F730003M04 skin 3' read
BY595803.1 Clone F930045C04 inner ear 3' read A
BY704353.1 Clone 1110035G07 embryonic tissue 5' read P
BY727953.1 Clone B930063O05 brain 5' read
BY729250.1 Clone C430046P22 embryonic tissue 5' read PA
BY766136.1 Clone F930011M09 inner ear 3' read A
CA874127.1 Clone NIA:K0930A07_IMAGE:30087078 uncharacterized tissue 3' read
CA874128.1 Clone NIA:K0930A07_IMAGE:30087078 uncharacterized tissue 5' read
CA949304.1 Clone IMAGE: pancreas 5' read P
BX524673.1 Clone IMAGp998L203352_;_IMAGE:1329571 thymus A
CF106569.1 Clone IMAGE:6927040 testis 5' read P
CF170657.1 Clone NIA:B0831D03_IMAGE:30470438 kidney 5' read P
BX629713.1 Clone LIONp462A0398 uncharacterized tissue 3' read A
BX634531.1 Clone LIONp462E02394 uncharacterized tissue 3' read
CF533654.1 Clone IMAGE:30361846 brain 5' read P
CF736103.1 Clone IMAGE:30609253 eye 5' read P
CK620304.1 Clone ml10e09 eye 5' read P
CN839875.1 Clone IMAGE:30918891 testis 5' read P
CR514332.1 Clone LIONp462A06436 uncharacterized tissue 3' read
BP759691.1 Clone mib25065 pancreas 3' read
BP766754.1 Clone mid14084 pancreas 3' read
BP768141.1 Clone mid30067 pancreas 3' read
CO801971.1 Clone IMAGE:30935806 ovary 5' read P
CX211804.1 brain 5' read
CX215188.1 brain 5' read P
CX244045.1 brain 5' read P
CX564102.1 Clone IMAGE:30941650 eye 5' read P
CJ058180.1 Clone A430091G21 thymus 5' read
CJ142622.1 Clone F930011M09 inner ear 5' read
EL959495.1 eye 5' read P
AA874467.1 Clone IMAGE:1281541 thymus 5' read P
AA940412.1 Clone IMAGE:1329571 thymus 5' read
AI508377.1 Clone IMAGE:1281541 thymus 5' read P
AI563828.1 Clone IMAGE:1281541 thymus 3' read
AI842906.1 Clone UI-M-AO1-aem-a-04-0-UI pineal gland 3' read A
AW122018.1 Clone UI-M-BH2.2-aoo-a-04-0-UI mixed 3' read A
AV344291.1 Clone 6430544A09 brain 3' read
BB079626.1 Clone 9330158O17 brain 3' read A
BB080802.1 Clone 9330164O19 brain 3' read A
BB082659.1 Clone 9330176F23 brain 3' read A
BB182518.2 Clone A230098N07 brain 3' read
BB208718.1 Clone A430089E23 thymus 3' read
BB230115.1 Clone A630025A09 thymus 3' read
BB235755.1 Clone A630055L02 thymus 3' read A
BB279064.1 Clone A930015A02 eye 3' read A
BB281152.1 Clone A930030A01 eye 3' read
BB347022.1 Clone B930063O05 brain 3' read A
BB348875.1 Clone B930072K23 brain 3' read
BB353915.1 Clone B930096A01 brain 3' read
BB416491.1 Clone C430046P22 embryonic tissue 3' read
BB508423.1 Clone D730017N12 mammary gland
BB558109.1 Clone E330032E22 ovary 3' read A
AL362810.1 Clone K9224B09 embryonic tissue 5' read P
AW742499.1 Clone IMAGE:2780248 inner ear 5' read P
BE686510.1 Clone IMAGE:3377157 thymus 3' read
BE861648.1 Clone UI-M-AO1-aem-a-04-0-UI pineal gland 5' read P
BB329020.1 Clone B530033A03 brain 3' read A
BB334487.1 Clone B830022O13 brain 3' read A
BB335424.1 Clone B830038B04 brain 3' read A
BB335525.1 Clone B830039D24 brain 3' read A
BB339707.1 Clone B930019M14 brain 3' read
BF023239.1 Clone IMAGE:3470647 thymus 5' read
BB595145.1 Clone C030004L08 brain 5' read P
BF300524.1 Clone IMAGE:4167016 salivary gland 5' read P
BG144699.1 Clone IMAGE:3333597 uncharacterized tissue 5' read
BG295500.1 Clone IMAGE:4504926 eye 5' read
BG404013.1 Clone IMAGE:4527068 eye 5' read
BG862377.1 Clone IMAGE:4917184 mammary gland 5' read P
BI731916.1 Clone IMAGE:5361113 eye 5' read
BI732824.1 Clone IMAGE:5361582 eye 5' read P
BI733972.1 Clone IMAGE:5363135 eye 5' read P
BB632956.1 Clone A230098N07 brain 5' read A
BB732238.1 Clone E970022H14 embryonic tissue 3' read
BB872069.1 Clone G630034G23 brain 5' read P
BB850498.1 Clone F930107I24 inner ear 5' read P
BB801105.1 Clone G630034G23 brain 3' read
BM935378.1 Clone UI-M-CG0p-bnw-a-01-0-UI eye 5' read
BM944589.1 Clone IMAGE:5695401 brain 5' read
BQ177739.1 Clone IMAGE:5700294 brain 5' read P
BQ442096.1 Clone IMAGE:5704761 brain 5' read A
BU505172.1 Clone IMAGE:6493120 eye 5' read A
BQ829730.1 liver 5' read P
CA321445.1 Clone IMAGE:6816389 brain 5' read P
CA327501.1 Clone IMAGE:6826702 brain 5' read P
CA528127.1 eye P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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