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UGID:264829     UniGene Mm.29490     Mus musculus (mouse)   Ctdsp2 Order cDNA clone, Links
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 (Ctdsp2)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_001106941.1 nuclear LIM interactor-interacting factor 2 isoform a M. musculus 100.0 269
NP_005721.3 nuclear LIM interactor-interacting factor 2 H. sapiens 96.7 270
NP_001079929.1 Os4 X. laevis 89.3 270
NP_955838.1 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 D. rerio 87.5 254
NP_001122411.1 SCP(Small C-terminal domain Phosphatase)-Like phosphatase family member (scpl-1) C. elegans 76.0 200
NP_648825.1 CG5830 D. melanogaster 75.4 260
XP_001695470.1 predicted protein C. reinhardtii 63.7 178
XP_001728188.1 hypothetical protein NCU08380 N. crassa 61.1 221
NP_013091.1 Plasma membrane associated protein phosphatase involved in the general stress response; required along with binding partner Whi2p for full activation of STRE-mediated gene expression, possibly through dephosphorylation of Msn2p; Psr1p S. cerevisiae 56.0 234
NP_174271.1 NLI interacting factor (NIF) family protein A. thaliana 47.9 169

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; mammary gland; eye; bone marrow; bone; mixed; adipose tissue; testis; pancreas; skin; uncharacterized tissue; stomach; intestine; thymus; lung; heart; extraembryonic tissue; spinal cord; dorsal root ganglion; prostate; bladder; kidney; ovary; inner ear; lymph node; salivary gland; nasopharynx; liver; spleen; muscle; vagina; molar
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10 D3|10 70.0 cM
UniSTS entry: Chr 10 RH126584
UniSTS entry: Chr 10 (n/a)
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (22)

AK049271.1 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330018I01 product:NUCLEAR LIM INTERACTOR-INTERACTING FACTOR 2 (NLI-INTERACTING FACTOR 2) (PROTEIN OS-4) homolog [Homo sapiens], full insert sequence P
AK045068.1 Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130024D01 product:NUCLEAR LIM INTERACTOR-INTERACTING FACTOR 2 (NLI-INTERACTING FACTOR 2) (PROTEIN OS-4) homolog [Homo sapiens], full insert sequence P
BC024143.1 Mus musculus cDNA clone IMAGE:5150281 A
BC085142.1 Mus musculus CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, mRNA (cDNA clone MGC:109690 IMAGE:6413242), complete cds PA
AK219670.1 Mus musculus cDNA, clone:Y2G0149D15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000040957, based on BLAT search P
AK216644.1 Mus musculus cDNA, clone:Y2G0139A18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000060482, based on BLAT search
AK210466.1 Mus musculus cDNA, clone:Y2G0118I06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000040957, based on BLAT search
AK209678.1 Mus musculus cDNA, clone:Y2G0115N19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000040957, based on BLAT search
AK207376.1 Mus musculus cDNA, clone:Y2G0107N01, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000040957, based on BLAT search
AK197015.1 Mus musculus cDNA, clone:Y1G0123L13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000040957, based on BLAT search
AK192161.1 Mus musculus cDNA, clone:Y1G0108A21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000040957, based on BLAT search
AK191385.1 Mus musculus cDNA, clone:Y1G0105L12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000040957, based on BLAT search P
AK190127.1 Mus musculus cDNA, clone:Y1G0101M22, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000040957, based on BLAT search
AK188443.1 Mus musculus cDNA, clone:Y0G0145D19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000040957, based on BLAT search
AK188387.1 Mus musculus cDNA, clone:Y0G0144P18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000040957, based on BLAT search
AK180119.1 Mus musculus cDNA, clone:Y0G0112P22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000040957, based on BLAT search
AK178564.1 Mus musculus cDNA, clone:Y0G0107D07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000060482, based on BLAT search
BC089307.1 Mus musculus CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, mRNA (cDNA clone IMAGE:6827536), partial cds PA
AK170287.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630041M17 product:CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, full insert sequence P
NM_001113470.1 Mus musculus CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 (Ctdsp2), transcript variant a, mRNA PA
BC025650.1 Mus musculus CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, mRNA (cDNA clone MGC:38258 IMAGE:5324816), complete cds PA
NM_146012.2 Mus musculus CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 (Ctdsp2), transcript variant b, mRNA PA

EST sequences (10 of 647) [Show all sequences]

CA564468.1 Clone NIA:K0326E09_IMAGE:30056792 bone 5' read
CA567771.1 Clone NIA:K0418E12_IMAGE:30060827 bone marrow 5' read
CA568372.1 Clone NIA:K0427A09_IMAGE:30061640 bone marrow 5' read
CA569182.1 Clone NIA:K0439A01_IMAGE:30062784 bone marrow 5' read
CA749739.1 Clone IMAGE:6831969 brain 5' read PM
CA750018.1 Clone IMAGE:6828634 brain 5' read
CA750345.1 Clone IMAGE:6831768 brain 5' read PM
BY026032.1 Clone G930034H06 mammary gland 5' read
BY026860.1 Clone G930039F21 mammary gland 5' read
BY027375.1 Clone G930043H13 mammary gland 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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