> Centromere protein A (Cenpa)
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UGID:1066850     UniGene Mm.290563     Mus musculus (mouse)   Cenpa Order cDNA clone, Links
Centromere protein A (Cenpa)

Mouse protein-coding gene Cenpa. Represented by 485 ESTs from 159 cDNA libraries. Corresponds to reference sequence NM_007681.2. [UniGene 1066850 - Mm.290563]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_031707.1 histone H3-like centromeric protein A M. musculus 100.0 133
NP_001800.1 CENPA gene product H. sapiens 82.7 139
NP_001157712.1 histone H3-like centromeric protein A D. rerio 60.6 142
NP_001090007.1 histone H3-like centromeric protein A X. laevis 58.5 147
XP_001697869.1 histone H3 variant C. reinhardtii 57.1 147
XP_956658.1 histone H3 N. crassa 56.2 143
NP_724345.1 histone H3 D. melanogaster 50.8 123
NP_177690.1 histone H3 A. thaliana 50.0 133
NP_496899.1 Protein HIS-42 C. elegans 47.9 121
Other hits (2 of 63) [Show all]SpeciesId(%)Len(aa)
NP_001100181.1 Cenpa gene product R. norvegicus 86.5 155
XP_004007278.1 PREDICTED: histone H3-like centromeric protein A, partial O. aries 82.9 117

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; thymus; mammary gland; mixed; brain; lung; eye; extraembryonic tissue; tongue; spleen; liver; stomach; other; dorsal root ganglion; lymph node; bone marrow; testis; skin; fertilized ovum; heart; uncharacterized tissue; pancreas; ovary; bone; connective tissue; kidney; inner ear; intestine
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5 B1|5 16.76 cM
UniSTS entry: Chr 5 PMC15551P2
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AK089033.1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430037B01 product:centromere autoantigen A, full insert sequence P
AK053763.1 Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130307K16 product:centromere autoantigen A, full insert sequence P
AK080283.1 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630024B10 product:centromere autoantigen A, full insert sequence
AK041138.1 Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530085G22 product:centromere autoantigen A, full insert sequence P
AK040313.1 Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430085N08 product:centromere autoantigen A, full insert sequence P
AK036511.1 Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830124C07 product:unclassifiable, full insert sequence
BC012280.1 Mus musculus centromere protein A, mRNA (cDNA clone IMAGE:3662678), with apparent retained intron PA
AK215106.1 Mus musculus cDNA, clone:Y2G0133P19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031073, based on BLAT search
AK184358.1 Mus musculus cDNA, clone:Y0G0129K15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031073, based on BLAT search
AK182390.1 Mus musculus cDNA, clone:Y0G0121M19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031073, based on BLAT search
AK165029.1 Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130306P06 product:hypothetical protein, full insert sequence
AF012709.1 Mus musculus centromere protein A (Cenp-a) mRNA, complete cds P
NM_007681.2 Mus musculus centromere protein A (Cenpa), mRNA P
AK011399.1 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610015A09 product:centromere autoantigen A, full insert sequence P
AK010718.1 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410072N22 product:centromere autoantigen A, full insert sequence P
BC011038.1 Mus musculus centromere protein A, mRNA (cDNA clone MGC:13888 IMAGE:4018429), complete cds PA

EST sequences (10 of 485) [Show all sequences]

BY002021.1 Clone 6620405D05 ovary 5' read
BY010510.1 Clone G730020G24 lung 5' read
BY012637.1 Clone G730034C24 lung 5' read P
BY012690.1 Clone G730034G14 lung 5' read P
BY012715.1 Clone G730034I10 lung 5' read
BY016772.1 Clone G830018M03 mammary gland 5' read
BY019281.1 Clone G830034I01 mammary gland 5' read
BY019395.1 Clone G830035B08 mammary gland 5' read P
BY020008.1 Clone G830038F18 mammary gland 5' read
BY020657.1 Clone G830042K19 mammary gland 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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