NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs

UGID:1064929     UniGene Mm.288642     Mus musculus (mouse)   Prrx1
Paired related homeobox 1 (Prrx1)

Mouse protein-coding gene Prrx1. Represented by 214 ESTs from 93 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 1064929 - Mm.288642]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_035257.1 paired mesoderm homeobox protein 1 isoform a M. musculus 100.0 244
NP_722543.1 paired mesoderm homeobox protein 1 R. norvegicus 100.0 244
XP_001097390.1 PREDICTED: paired mesoderm homeobox protein 1 isoform 3 M. mulatta 100.0 244
XP_003893600.1 PREDICTED: paired mesoderm homeobox protein 1 isoform 2 P. anubis 100.0 244
XP_001141191.1 PREDICTED: paired mesoderm homeobox protein 1 isoform 2 P. troglodytes 100.0 244
NP_073207.1 PRRX1 gene product H. sapiens 100.0 244
XP_850725.1 PREDICTED: paired mesoderm homeobox protein 1 isoform 2 C. lupus familiaris 100.0 244
XP_001495768.1 PREDICTED: paired mesoderm homeobox protein 1-like isoform 1 E. caballus 100.0 244
XP_003481450.1 PREDICTED: paired mesoderm homeobox protein 1-like S. scrofa 100.0 244
XP_002715516.1 PREDICTED: paired mesoderm homeobox 1 isoform 1 O. cuniculus 100.0 244
XP_001364765.1 PREDICTED: paired mesoderm homeobox protein 1-like isoform 1 M. domestica 99.6 244
NP_001075208.1 PRRX1 gene product B. taurus 99.6 244
NP_956344.1 prrx1b gene product D. rerio 92.2 244
NP_509860.1 Protein ALR-1 C. elegans 65.3 95
NP_611756.1 CG9876 D. melanogaster 64.2 165
NP_001089185.1 retina and anterior neural fold homeobox 2 X. laevis 47.3 205
Other hits (2 of 21) [Show all]SpeciesId(%)Len(aa)
XP_004013733.1 PREDICTED: paired mesoderm homeobox protein 1 isoform 1 O. aries 99.2 244
XP_002190174.1 PREDICTED: paired related homeobox 1 T. guttata 98.2 164

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; skin; mixed; brain; uncharacterized tissue; eye; prostate; heart; mammary gland; bone; lung; thymus; connective tissue; pituitary gland; joint; pancreas; spleen; kidney; inner ear; muscle; intestine; pineal gland; uterus; bone marrow; vagina; spinal cord; dorsal root ganglion; salivary gland; thyroid; nasopharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1 H2.1|1 70.53 cM
UniSTS entry: Chr 1 AA755424
UniSTS entry: Chr 1 AI385634 [Map Viewer]
UniSTS entry: Chr 1 AI843499
UniSTS entry: Prrx1
UniSTS entry: Chr 1 Prrx1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (22)

AK038736.1 Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230058M14 product:unclassifiable, full insert sequence
AK038524.1 Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230024N07 product:hypothetical protein, full insert sequence
AK089006.1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430035F19 product:paired related homeobox 1, full insert sequence P
AK084387.1 Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230035K19 product:PAIRED MESODERM HOMEOBOX PROTEIN 1 (PRX-1) (PAIRED RELATED HOMEOBOX PROTEIN 1) (HOMEOBOX PROTEIN MHOX) (HOMEOBOX PROTEIN K-2) (RHOX) homolog [Mus m ... P
AK048023.1 Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130030M18 product:unclassifiable, full insert sequence
AK032773.1 Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720434F24 product:paired related homeobox 1, full insert sequence P
AK031075.1 Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930402I12 product:PAIRED MESODERM HOMEOBOX PROTEIN 1 (PRX-1) (PAIRED RELATED HOMEOBOX PROTEIN 1) (HOMEOBOX PROTEIN MHOX) (HOMEOBOX PROTEIN K-2) (RHOX) homolog [Mus ... P
AK029347.1 Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4833401H05 product:unclassifiable, full insert sequence P
BC024568.1 Mus musculus paired related homeobox 1, mRNA (cDNA clone IMAGE:5030774), with apparent retained intron A
NM_175686.3 Mus musculus paired related homeobox 1 (Prrx1), transcript variant 2, mRNA PA
BC060300.1 Mus musculus cDNA clone IMAGE:30146418, partial cds A
BC092372.1 Mus musculus paired related homeobox 1, mRNA (cDNA clone MGC:90699 IMAGE:30533016), complete cds PA
NM_001025570.1 Mus musculus paired related homeobox 1 (Prrx1), transcript variant 3, mRNA P
AB221686.1 Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12 days neonate,strain=BALB/c),(tissue_type=testis,dev_stage=adult, strain=C57BL/6J), clone:V01Y050E23 P
AK165914.1 Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730018L19 product:paired related homeobox 1, full insert sequence P
U03873.1 Mus musculus homeobox (Pmx) mRNA, complete cds P
X59725.1 M.musculus mRNA for homeobox gene P
L06502.1 Mus musculus MHox protein mRNA, complete cds P
NM_011127.2 Mus musculus paired related homeobox 1 (Prrx1), transcript variant 1, mRNA PA
AK019503.1 Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632419J16 product:paired related homeobox 1, full insert sequence P
AK008428.2 Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010204A19 product:paired related homeobox 1, full insert sequence P
AK008112.1 Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010005A21 product:paired related homeobox 1, full insert sequence P

EST sequences (10 of 214) [Show all sequences]

CA563632.1 Clone NIA:K0316B09_IMAGE:30055796 bone 5' read
CA566589.1 Clone NIA:K0403B09_IMAGE:30059348 bone marrow 5' read
CA748363.1 brain
BY014321.1 Clone G730045N15 lung 5' read
BY014720.1 Clone G730047L07 lung 5' read
BY015240.1 Clone G730050A03 lung 5' read P
BY059765.1 Clone I920003G17 kidney 5' read P
BY086114.1 Clone K630058H21 mixed 5' read P
BY139672.1 Clone L930124A15 embryonic tissue 5' read
BY147142.1 Clone L930230O21 embryonic tissue 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help