> CCR4-NOT transcription complex, subunit 7 (Cnot7)
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UGID:665814     UniGene Mm.272551     Mus musculus (mouse)   Cnot7 Order cDNA clone, Links
CCR4-NOT transcription complex, subunit 7 (Cnot7)

Mouse protein-coding gene Cnot7. Represented by 542 ESTs from 180 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 665814 - Mm.272551]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001258471.1 CCR4-NOT transcription complex subunit 7 isoform 1 M. musculus 100.0 284
NP_001100783.1 Cnot7 gene product R. norvegicus 100.0 284
XP_001364122.1 PREDICTED: CCR4-NOT transcription complex subunit 7-like M. domestica 100.0 284
XP_002194151.1 PREDICTED: CCR4-NOT transcription complex subunit 7 T. guttata 100.0 284
NP_001006454.1 CNOT7 gene product G. gallus 100.0 284
XP_003205828.1 PREDICTED: CCR4-NOT transcription complex subunit 7-like M. gallopavo 100.0 284
XP_001508901.1 PREDICTED: CCR4-NOT transcription complex subunit 7-like O. anatinus 100.0 284
XP_001095485.1 PREDICTED: CCR4-NOT transcription complex subunit 7 isoform 4 M. mulatta 100.0 284
XP_003902512.1 PREDICTED: CCR4-NOT transcription complex subunit 7 P. anubis 100.0 284
XP_001141414.1 PREDICTED: CCR4-NOT transcription complex subunit 7 isoform 2 P. troglodytes 100.0 284
NP_037486.2 CCR4-NOT transcription complex subunit 7 isoform 1 H. sapiens 100.0 284
XP_540010.2 PREDICTED: CCR4-NOT transcription complex subunit 7 isoform 1 C. lupus familiaris 100.0 284
XP_001488503.1 PREDICTED: CCR4-NOT transcription complex subunit 7-like isoform 2 E. caballus 100.0 284
XP_001924495.3 PREDICTED: CCR4-NOT transcription complex subunit 7 isoform 1 S. scrofa 100.0 284
NP_001029484.1 CNOT7 gene product B. taurus 100.0 284
XP_004021782.1 PREDICTED: CCR4-NOT transcription complex subunit 7 O. aries 100.0 284
XP_002709558.1 PREDICTED: CCR4-NOT transcription complex, subunit 7-like O. cuniculus 100.0 284
XP_003221616.1 PREDICTED: CCR4-NOT transcription complex subunit 7-like A. carolinensis 99.7 284
NP_001089689.1 CCR4-NOT transcription complex subunit 7 X. laevis 97.9 284
NP_001070723.1 cnot7 gene product D. rerio 97.5 284
NP_729775.1 Pop2, isoform B D. melanogaster 77.7 273
NP_178193.1 putative CCR4-associated factor 1-6 A. thaliana 60.5 266
XP_001697447.1 CCR4-associated factor C. reinhardtii 59.3 270
NP_499553.1 Protein CCF-1 C. elegans 51.1 280
XP_959029.1 CCR4-NOT transcription complex subunit 7 N. crassa 50.8 356
NP_014450.3 Pop2p S. cerevisiae 47.0 268
Other hits (2 of 45) [Show all]SpeciesId(%)Len(aa)
NP_001096375.1 cnot7 gene product X. tropicalis 97.5 284
XP_003455861.1 PREDICTED: CCR4-NOT transcription complex subunit 7-like O. niloticus 96.1 284

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; mammary gland; ovary; mixed; lung; fertilized ovum; skin; eye; bladder; thymus; intestine; uncharacterized tissue; prostate; testis; molar; heart; blood; pancreas; spinal cord; stomach; bone; epididymis; bone marrow; kidney; connective tissue; inner ear; liver; lymph node; extraembryonic tissue; dorsal root ganglion; tongue; spleen; adipose tissue; salivary gland; thyroid; sympathetic ganglion; nasopharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 8
Map position: 8 A4|8
UniSTS entry: Chr 8 AU022737
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

AK044535.1 Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930019F09 product:CCR4-NOT transcription complex, subunit 7, full insert sequence P
AK199982.1 Mus musculus cDNA, clone:Y1G0132P16, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000064300, based on BLAT search
AK198085.1 Mus musculus cDNA, clone:Y1G0127B11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034012, based on BLAT search A
AK132063.1 Mus musculus 12 days embryo head cDNA, RIKEN full-length enriched library, clone:3010028M11 product:CCR4-NOT transcription complex, subunit 7, full insert sequence P
AK137838.1 Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130024A08 product:CCR4-NOT transcription complex, subunit 7, full insert sequence P
AK135669.1 Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420402E19 product:CCR4-NOT transcription complex, subunit 7, full insert sequence P
AK166449.1 Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930023E07 product:CCR4-NOT transcription complex, subunit 7, full insert sequence P
AK147048.1 Mus musculus 16 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920091F11 product:CCR4-NOT transcription complex, subunit 7, full insert sequence P
NM_001271542.1 Mus musculus CCR4-NOT transcription complex, subunit 7 (Cnot7), transcript variant 2, mRNA A
NM_001271543.1 Mus musculus CCR4-NOT transcription complex, subunit 7 (Cnot7), transcript variant 3, mRNA A
NM_011135.5 Mus musculus CCR4-NOT transcription complex, subunit 7 (Cnot7), transcript variant 1, mRNA PA
AK009561.1 Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310032B08 product:CCR4-NOT transcription complex, subunit 7, full insert sequence P
BC006021.1 Mus musculus CCR4-NOT transcription complex, subunit 7, mRNA (cDNA clone MGC:6050 IMAGE:3590764), complete cds PA

EST sequences (10 of 542) [Show all sequences]

CA578097.1 Clone NIA:K0718E09_IMAGE:30075320 bone marrow 5' read P
CA579652.1 Clone NIA:K0740E07_IMAGE:30077430 bone marrow 5' read P
BY009356.1 Clone G730012A12 lung 5' read
BY017033.1 Clone G830020B03 mammary gland 5' read
BY021439.1 Clone G830047F23 mammary gland 5' read
BY025705.1 Clone G930033A10 mammary gland 5' read P
BY066172.1 Clone I920047G19 heart 5' read
BY138627.1 Clone L930108K24 embryonic tissue 5' read
BY154208.1 Clone G530005I19 bone marrow 5' read
BY238343.1 Clone K230006H02 brain 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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